BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3745.p
         (279 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981526|ref|YP_001354648.1| phosphomethylpyrimidine kinase ...   373   e-105
gi|152980029|ref|YP_001352906.1| phosphomethylpyrimidine kinase ...   138   4e-34

>gi|152981526|ref|YP_001354648.1| phosphomethylpyrimidine kinase
           [Janthinobacterium sp. Marseille]
          Length = 282

 Score =  373 bits (958), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/272 (67%), Positives = 229/272 (84%), Gaps = 1/272 (0%)

Query: 1   VQNQTPPLILTFGAADPVGATGVQADLATFAAMGCHGLSVVTALLIGDTARVEDVQVVEV 60
           +QNQT PLILTFG  DPVGA G+QADLA+FAAMGCHGLSV+T+L IGDTAR+ED Q+++ 
Sbjct: 1   MQNQTSPLILTFGPTDPVGAVGIQADLASFAAMGCHGLSVITSLFIGDTARIEDTQIIDS 60

Query: 61  DWVADQARVILEDMAVSAFKVGALGSIENISVIAEIVSDYPDVPLILDPFISALANQ-ED 119
           DWVADQARV+LEDM V+AFKVGA+GSIEN+S IAEIVSDYPD+PLI DPF+S+L +Q  D
Sbjct: 61  DWVADQARVVLEDMPVAAFKVGAVGSIENVSAIAEIVSDYPDIPLIFDPFLSSLPDQGPD 120

Query: 120 EDDRLIAIRELLIPQATVLVCSAGELTRLAETWREPALGDTLMLDAMRIIELGCEYLLVT 179
            +D L+A RELLIPQ TVL+ S  EL R+AETWREP+  D + +DAMR+IE+GCEY+ VT
Sbjct: 121 GEDMLMATRELLIPQTTVLILSTVELARMAETWREPSEEDMMAVDAMRLIEMGCEYVFVT 180

Query: 180 NTQTDLQEVANSLFDESGLVRQDAWPRLPGSFVGAGTTLSAAMAAMLANDLEAPLAASEA 239
            T +DL +VAN+LFDESG++R D W R+ GS+ GAG TL+A +AA+LAN L+ P A  EA
Sbjct: 181 GTPSDLTDVANTLFDESGVIRHDNWQRISGSYSGAGGTLAATIAALLANGLDVPEAVFEA 240

Query: 240 QEFTLAALANAQRIGMGKLLPDRYFWARESED 271
           QEFT+A++ANAQR+GMGKL+ DRYFWARE ++
Sbjct: 241 QEFTIASIANAQRLGMGKLVLDRYFWAREFDE 272


>gi|152980029|ref|YP_001352906.1| phosphomethylpyrimidine kinase
           [Janthinobacterium sp. Marseille]
          Length = 273

 Score =  138 bits (347), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/257 (33%), Positives = 132/257 (51%), Gaps = 7/257 (2%)

Query: 7   PLILTFGAADPVGATGVQADLATFAAMGCHGLSVVTALLIGDTARVEDVQVVEVDWVADQ 66
           P++L     DP G  G+QAD+    A GCH    VTAL + ++  V D +V++  WV  Q
Sbjct: 16  PVVLCLSGHDPSGGAGLQADIEALMAQGCHAAPTVTALTVQNSVDVSDFRVLDSAWVLAQ 75

Query: 67  ARVILEDMAVSAFKVGALGSIENISVIAEIVSDYPDVPLILDPFISALANQEDEDDRL-I 125
           A  ++ D+ ++  K+G LGS+E +  +A I+   P+VP++ DP + A        D +  
Sbjct: 76  AEAVITDLPIAGIKLGMLGSVEMVDTVAGILQRLPNVPVVCDPVLRAGGGGALGKDEVGY 135

Query: 126 AIRELLIPQATVLVCSAGELTRLAETWREPALGDTLMLDAMRIIELGCEYLLVTNTQTDL 185
           A+RE L+P AT++  +  E   LAE     A  D     A +++   C++LL+T    D 
Sbjct: 136 AMRERLLPLATIVTPNLPEARILAELPNGTA--DEC---AAKLLPF-CQHLLITGGHGDE 189

Query: 186 QEVANSLFDESGLVRQDAWPRLPGSFVGAGTTLSAAMAAMLANDLEAPLAASEAQEFTLA 245
           Q+V N L+   G        RLPGS+ G+G TL++ +A  LA       A   A  +T  
Sbjct: 190 QQVHNRLYSRDGSSHTFTCDRLPGSYHGSGCTLASTLAGRLALGEATVEAVENALAYTWR 249

Query: 246 ALANAQRIGMGKLLPDR 262
            L +A R G G+  P R
Sbjct: 250 TLRDADRSGKGQHFPRR 266


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 563,350
Number of extensions: 19579
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 2
Length of query: 279
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 197
Effective length of database: 917,867
Effective search space: 180819799
Effective search space used: 180819799
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)