BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3743.p
         (194 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981964|ref|YP_001354644.1| PilI twitching motility protein...   122   2e-29

>gi|152981964|ref|YP_001354644.1| PilI twitching motility protein
           [Janthinobacterium sp. Marseille]
          Length = 191

 Score =  122 bits (305), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/195 (40%), Positives = 104/195 (53%), Gaps = 7/195 (3%)

Query: 1   MSHP-KDFLIDAPHSPAAPTSPPREGLEQFQASLLARM-AACDNESTRSRRLAVLIGNRH 58
           MS P  DF  D   SP +  +  R  L +FQA L+ RM  A     TR  +L VLIG + 
Sbjct: 1   MSQPTSDFQTDIA-SPKSDITARRTRLREFQAQLVERMQTARSGADTRVNQLGVLIGEQR 59

Query: 59  CLIPLTQASEILPLDGLTLTPVPATHAWFRGLLNIRGNLVGLADLSGLAGAPLQPCGAGS 118
            L+ L  A EI+ +   T+TPVP T  WF GL NIRGNL+ + D +   G P       S
Sbjct: 60  WLLNLQTAGEIVAVG--TITPVPLTQPWFLGLSNIRGNLISVIDFARFQGLPATNIEKDS 117

Query: 119 HALLLAPSLAPQCGLLVAGVLGLRDIEEMTRISKKYEEGIHLPGVNGRYKDGSGQQWDEL 178
             +   P+LA   GLLV+ VLGLR++ EM   +   +     P  + RY D   Q W EL
Sbjct: 118 RIVAFGPALAFNSGLLVSRVLGLRNVAEMQLHADDADAAP--PWASKRYLDQESQVWTEL 175

Query: 179 DLSALSRDSNFLQIG 193
           DLS++ ++  FLQ+G
Sbjct: 176 DLSSVIQNPQFLQVG 190


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 405,633
Number of extensions: 15685
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 116
Effective length of database: 932,655
Effective search space: 108187980
Effective search space used: 108187980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)