BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3742.p (725 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981516|ref|YP_001354643.1| PilJ twitching motility protein... 771 0.0 gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 117 2e-27 gi|152981383|ref|YP_001351716.1| methyl-accepting chemotaxis pro... 112 8e-26 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 105 9e-24 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 105 1e-23 >gi|152981516|ref|YP_001354643.1| PilJ twitching motility protein [Janthinobacterium sp. Marseille] Length = 760 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/702 (59%), Positives = 519/702 (73%) Query: 22 VTAPSRSLRLPYLCRFSLRTQTRLLLGVLAVSLTALCLFMWLGARLYLLATLQTNLASDL 81 V S + LP + + L+ Q R+LL L SL +F+WL A L + QT +A D Sbjct: 58 VLQKSGDISLPLIGKLPLQQQVRILLIALGSSLALGAVFVWLNADYSALTSTQTQIAGDA 117 Query: 82 VMHSQRIGKAVPNAIQGNPQAFVQLAQSRNEFNRGLLLLSSGGLYQGQNIGPPDAAIKPV 141 +MHSQR+GKA PNAIQGN +AF QLA SR EFN L +LS GG+YQG+NI PPDA + + Sbjct: 118 LMHSQRVGKATPNAIQGNKEAFKQLADSRKEFNSDLTILSKGGVYQGRNISPPDAQMDAM 177 Query: 142 LENVEHIWRRTDLAGETILGMEKELTGFGTTLKRLNQLLPVMLDLSEQIAMLQSQGHPTT 201 L+ + +W TD A TIL +EKELTGFGTTL+ LN + P +L+L+EQI+ L++QG + Sbjct: 178 LKETQKLWTGTDKAAATILKLEKELTGFGTTLQILNGISPNLLELTEQISTLKAQGGASP 237 Query: 202 REMAAASQLVMLTLRLGRSSNEFLTSEGVNPETAFMLGKDITAFGDLLKSLQEGNDMLRL 261 RE AAA QLVMLT RL RS+NEFL+SEGVNPETAF+LGKD F ++++ G++ LRL Sbjct: 238 RETAAAGQLVMLTQRLARSANEFLSSEGVNPETAFLLGKDTNTFREIVEGFINGSEALRL 297 Query: 262 RPASDPDLRDKLQELSRVFGEYQPQIAGILGNLQNFIAAKRAEQLVFVENETLKRHLTEL 321 ++PD RDKL EL F EYQ I+ ILGNLQNFI+AK+AE+L+F ENE LK+ LTEL Sbjct: 298 SKTTEPDTRDKLLELQANFNEYQKSISLILGNLQNFISAKQAEELIFKENEALKQRLTEL 357 Query: 322 QDAYRVALKARSWTFWAVLAAMAMALLSAIGIALAQLQSSRNNAAAAEARRQEAEQQRQL 381 Q +YR + + FW +L ++ ALLSA GIAL LQ SRN A+ARR EAE QR Sbjct: 358 QQSYRSEQDSLTLPFWLMLLSVLAALLSAAGIALVLLQDSRNRTKEADARRLEAEGQRLE 417 Query: 382 AQQEEEKAMRANHQTQAAILRLMTELQKVADGDLTVHTTVSDDVTGAIADSVNYTVEALR 441 AQ++EE+A +AN Q QAAILRLM ELQ+VADGDLTV TVS+D+TGAIADSVNYTVE LR Sbjct: 418 AQKQEEEAKQANDQNQAAILRLMNELQEVADGDLTVQATVSEDITGAIADSVNYTVEELR 477 Query: 442 GLVEQVTQMAAKVALSSQQVRGTTTELGAAARAQAHRIQRIAQAMLEMSTQINGISVSAD 501 GLV +VT A +V +S Q + +TEL A++ Q+ IQ QA+L+M+ QI +S SA+ Sbjct: 478 GLVGRVTNTAEQVTSASTQAQNISTELLEASQKQSRDIQETGQAVLDMAVQITDVSKSAN 537 Query: 502 ESADVARHAVVVAERGTRAVEDAVKAMDGIGEQIRETSGRITRLGASSQMIGEITELISD 561 ESA+VAR +V AE G+RAVE+A+K M+ I EQI+ETS RI RLG SSQ IGEITELISD Sbjct: 538 ESAEVARQSVTAAEEGSRAVENAIKGMNEIREQIQETSKRIKRLGESSQEIGEITELISD 597 Query: 562 ITERTNVLALNAAIQAASAGEAGRGFSVVAEEVQHLAERSSAATREIGALVRMIQADTRD 621 ITE+TNVLALNAAIQAASAGEAGRGFSVVAEEVQ LAERS AT++IGALVR IQ DT D Sbjct: 598 ITEQTNVLALNAAIQAASAGEAGRGFSVVAEEVQRLAERSGEATKQIGALVRTIQTDTHD 657 Query: 622 VVVAMEKSTTGVTDGAVLSDAAGSALADIRSVSKQLAELIQGMAAATREQAVSASGVAQQ 681 V AMEKST GV +GA LSDAAG+AL+DIR VS +LAELIQG+++AT +QA SA+GVAQ Sbjct: 658 AVAAMEKSTQGVVEGAKLSDAAGAALSDIRRVSNRLAELIQGISSATEQQATSANGVAQN 717 Query: 682 IQGILSENDIIEQSREQVSTLYEELWDAARQLESSVSRFRVT 723 IQGIL+ + ++ +Q + EL A +L++SVSRFRVT Sbjct: 718 IQGILTVTEQTQEGTQQTAHSIRELSKLAEELKNSVSRFRVT 759 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 99/322 (30%), Positives = 170/322 (52%), Gaps = 35/322 (10%) Query: 408 QKVADGDLTVHTTV-SDDVTGAIADSVNYTVEALRGLVEQVTQMAAKVALSSQQVRGTTT 466 Q VA GDLT V S D TG + ++ ++L G+V++V A +A +S Q+ Sbjct: 222 QTVASGDLTSQINVKSKDETGQLLQALKDMNQSLIGIVDEVRSGTATMATASNQIASGNM 281 Query: 467 ELGAAARAQAHRIQRIAQAMLEMSTQINGISVSADESADVARHAVVVAERGTRAVEDAVK 526 +L + QA ++ A +M E+++ + + +A ++ ++ A +A +G + V + V Sbjct: 282 DLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANSLSLSASEIAVKGGQVVSEVVV 341 Query: 527 AMDGIGEQIRETSGRITRLGASSQMIGEITELISDITERTNVLALNAAIQAASAGEAGRG 586 M+GI + S++ I +I +I I +TN+LALNAA++AA AGE GRG Sbjct: 342 TMNGIND--------------SAKKITDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG 387 Query: 587 FSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMEKSTTGVTDGAVLSDAAGSA 646 F+VVA EV++LA+RS+AA +EI AL+ + S V G+ L AGS Sbjct: 388 FAVVASEVRNLAQRSAAAAKEIKALI--------------DDSVGRVDTGSKLVVQAGST 433 Query: 647 LADIRSVSKQLAELIQGMAAATREQAVSASGVAQQIQGILSENDIIEQSREQVSTLYE-- 704 + ++ K++ +++ + AA++EQ ++G+ Q Q I + + +Q+ V Sbjct: 434 MTEVVDSVKRVTDIMAEIMAASQEQ---SAGIEQVNQAIAQMDHVTQQNAALVEEAAAAA 490 Query: 705 -ELWDAARQLESSVSRFRVTVS 725 L D A +LE +VS F++ S Sbjct: 491 GSLKDQAVKLEQTVSVFKIDAS 512 >gi|152981383|ref|YP_001351716.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 662 Score = 112 bits (280), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 89/290 (30%), Positives = 153/290 (52%), Gaps = 34/290 (11%) Query: 408 QKVADGDLTV--HTTVSDDVTGAIADSVNYTVEALRGLVEQVTQMAAKVALSSQQVRGTT 465 +K+A GDLT+ +D+V G + S+N + L +V + ++ ++ ++ Sbjct: 211 RKLATGDLTIRMENKRTDEV-GQLLASINSIGQGLANVVWNIRNGTKTLSTATNEIAAGN 269 Query: 466 TELGAAARAQAHRIQRIAQAMLEMSTQINGISVSADESADVARHAVVVAERGTRAVEDAV 525 +L + QA ++ A AM EM++ + + +A+++ +AR A VA +G V + V Sbjct: 270 LDLSSRTEQQASSLEETASAMEEMTSTVKENAANAEQANQLARTASEVAVKGGNVVAEVV 329 Query: 526 KAMDGIGEQIRETSGRITRLGASSQMIGEITELISDITERTNVLALNAAIQAASAGEAGR 585 MD I + SS+ I +I +I I +TN+LALNAA++AA AGE GR Sbjct: 330 NTMDSINQ--------------SSKKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGR 375 Query: 586 GFSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMEKSTTGVTDGAVLSDAAGS 645 GF+VVA EV+ LA+RSSAA REI +L+ E S V G+ L AG Sbjct: 376 GFAVVAGEVRSLAQRSSAAAREIKSLI--------------EDSVNKVQSGSKLVAHAGD 421 Query: 646 ALADIRSVSKQLAELIQGMAAATREQAVSASGVAQQIQGILSENDIIEQS 695 + ++ + K++ ++ +++A+REQ++ G+ Q Q I + + +Q+ Sbjct: 422 TMNEVVASIKRVDNIMTEISSASREQSI---GIEQVNQAIAQMDQVTQQN 468 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 105 bits (262), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 97/319 (30%), Positives = 162/319 (50%), Gaps = 35/319 (10%) Query: 408 QKVADGDLTVHTTV-SDDVTGAIADSVNYTVEALRGLVEQVTQMAAKVALSSQQVRGTTT 466 +KVADGDLT V S D TG + ++ L +V QV +A +S Q+ Sbjct: 224 RKVADGDLTGTIVVTSKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNL 283 Query: 467 ELGAAARAQAHRIQRIAQAMLEMSTQINGISVSADESADVARHAVVVAERGTRAVEDAVK 526 +L + QA ++ A +M E+++ + + +A +S +A A VA RG V V+ Sbjct: 284 DLSSRTEEQASSLEETASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVE 343 Query: 527 AMDGIGEQIRETSGRITRLGASSQMIGEITELISDITERTNVLALNAAIQAASAGEAGRG 586 M I + S+ I +I +I I +TN+LALNAA++AA AGE GRG Sbjct: 344 TMGSIND--------------SANKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG 389 Query: 587 FSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMEKSTTGVTDGAVLSDAAGSA 646 F+VVA EV++LA+RS++A +EI L+ + S V +G+ L AG+ Sbjct: 390 FAVVASEVRNLAQRSASAAKEIKTLI--------------DDSVEKVNNGSRLVHDAGTT 435 Query: 647 LADIRSVSKQLAELIQGMAAATREQAVSASGVAQQIQGILSENDIIEQS---REQVSTLY 703 +A++ +++ +++ + AA++EQ G+ Q Q ++ + + +Q+ E+ + Sbjct: 436 MAEVVESVRRVTDIMGEITAASQEQ---TDGIEQINQAVMQMDQVTQQNAALVEEAAAAA 492 Query: 704 EELWDAARQLESSVSRFRV 722 E L D A L VS F++ Sbjct: 493 ESLQDQANNLSQVVSVFKL 511 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 92/289 (31%), Positives = 153/289 (52%), Gaps = 32/289 (11%) Query: 408 QKVADGDLTVHTTV-SDDVTGAIADSVNYTVEALRGLVEQVTQMAAKVALSSQQVRGTTT 466 +KVADGDLT V S D TG + ++ E L +V QV +A +S Q+ Sbjct: 224 RKVADGDLTGSIVVESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNL 283 Query: 467 ELGAAARAQAHRIQRIAQAMLEMSTQINGISVSADESADVARHAVVVAERGTRAVEDAVK 526 +L + QA ++ A +M E+++ + + +A +S +A A VA RG V K Sbjct: 284 DLSSRTEQQASSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVS---K 340 Query: 527 AMDGIGEQIRETSGRITRLGASSQMIGEITELISDITERTNVLALNAAIQAASAGEAGRG 586 +D +GE + S++ I +I +I I +TN+LALNAA++AA AGE GRG Sbjct: 341 VVDTMGE-----------INDSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG 389 Query: 587 FSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMEKSTTGVTDGAVLSDAAGSA 646 F+VVA EV+ LA+RS++A +EI L+ D+ D V+ G+ L D AG+ Sbjct: 390 FAVVASEVRTLAQRSASAAKEIKELI----GDSVD----------KVSIGSRLVDDAGAT 435 Query: 647 LADIRSVSKQLAELIQGMAAATREQAVSASGVAQQIQGILSENDIIEQS 695 + ++ K++ +++ + AA++EQ G+ Q Q ++ + + +Q+ Sbjct: 436 MREVVESVKRVTDIMSEITAASQEQ---TDGIEQINQAVMQMDQVTQQN 481 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.127 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,224,420 Number of extensions: 43251 Number of successful extensions: 282 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 247 Number of HSP's successfully gapped: 20 Length of query: 725 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 635 Effective length of database: 888,291 Effective search space: 564064785 Effective search space used: 564064785 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)