BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3741.p (739 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and... 395 e-111 gi|152980691|ref|YP_001353785.1| CheA chemotaxis protein [Janthi... 209 7e-55 gi|152980198|ref|YP_001352775.1| CheA chemotaxis protein [Janthi... 164 2e-41 gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthi... 156 4e-39 gi|152981669|ref|YP_001353298.1| chemotaxis related protein [Jan... 89 1e-18 >gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and regulator [Janthinobacterium sp. Marseille] Length = 1901 Score = 395 bits (1016), Expect = e-111, Method: Compositional matrix adjust. Identities = 243/620 (39%), Positives = 362/620 (58%), Gaps = 50/620 (8%) Query: 148 MHEEIDPLLLPVFLEEAQELITGIGETLLALPAAEHRGVADASLLAELARPLHTLKGSAR 207 + +EID LLPVF+EE ++++ +G+ L A + + + L L+R LHT+KGSAR Sbjct: 1120 IRDEIDTDLLPVFIEEGRDMLPQMGQALRAW----QQDLGNTLLPQSLSRLLHTVKGSAR 1175 Query: 208 MVGARHLSRCLHDMETTLQRLALDDAVQESGSLAALLALYDQAIEQFNTLEQGL--AVSS 265 M GA L + +H+MET ++ + + +L LLA YDQ + F L+ AVS+ Sbjct: 1176 MAGAMSLGQHMHEMETRIENIT-HAGHPSAAALEDLLARYDQGLHLFEQLQNTNKPAVSA 1234 Query: 266 SPARRDGLA-----------------------------DSQLTAPLIRIRTTLLDKLLNQ 296 S + + A + APL+R+R +LD+L+NQ Sbjct: 1235 SETKPESAAAKAELPQIHSAMPVTPNKLAPIVPQAGALAATAAAPLVRVRADILDRLVNQ 1294 Query: 297 VGEVSIRRAQLDNEITALQGDARALGEQLGKLAEQLGQLQRHCGDTPWVAPPGQDPD-SA 355 GEVSI R++L+ E+ L+ L E + +L EQL +++ ++ + G D Sbjct: 1295 AGEVSISRSKLETEVGTLRQSMGELSENVVRLREQLREIEMQA-ESQITSRMGISADREF 1353 Query: 356 APLA---------LAGSMQEALGEALQHQKQLLQRVLKTREDLRQQGRTTRELQQELMHA 406 PL L M E++ + Q+ L + + DL Q R TR+LQQ+LM Sbjct: 1354 DPLEFDRFTRLQELTRMMAESVNDVGSVQQNLSRTIDSASTDLTTQARLTRDLQQDLMRV 1413 Query: 407 RMVKFNSMESRMQHLARQVALETGKPLTLELSDYRLHIDRAILERLMGPLEHLLRNAAVH 466 RMV+F S+ R+ + RQ + ET K + L++ + IDR +LE++ GP EHLLRNA VH Sbjct: 1414 RMVQFASISERLFRVTRQASKETDKRVNLDIRGSAVEIDRGVLEKMAGPFEHLLRNAIVH 1473 Query: 467 GIEDAEVRRAAGKPVSGQLRIQASHEGNEAVIRVSDDGRGLDLQAIRDKARQRGLI-EAQ 525 GIE E R+AAGK +G+LRI+ EGNE VI SDDG+GL+L IR+KA GL+ E Sbjct: 1474 GIESREKRQAAGKNETGELRIEIRQEGNEVVIHFSDDGQGLNLDNIRNKALSSGLLTEDM 1533 Query: 526 QISEARLAELIFEPGFSTSTQVSALAGRGVGMDVVRAEVAALGGRMTVHSRAGRGVLFTL 585 +S++ +LIF PGFST+ +++ LAGRG+GMDVVR+E A+LGGR+ + S AG+G FT+ Sbjct: 1534 ALSDSETTDLIFHPGFSTAEEITELAGRGIGMDVVRSEAASLGGRVAIASEAGKGANFTI 1593 Query: 586 YLPLSLAVQHVCLLRHGQQPYAIPSTLIERVVQLRSDQAQDALQQRALEFNGQRLALYPL 645 +LPL+LAV V LL G + YAIPS L+E+V QL++ A + A+ + QR+ ++ L Sbjct: 1594 HLPLTLAVTQVVLLSTGGKTYAIPSVLVEQVQQLKTGPLAAAYNEGAVMWQSQRVPMHYL 1653 Query: 646 HCLLDEPAHPAWPDPSDSAFALLIKRGDELMVIMADHVSGNREVVVKPVGPQVATLAGVV 705 LL + P + L++K G+E + + D + GNREVVVK +GPQ++ + G+ Sbjct: 1654 SSLLGDLQ--VAPVTQQYSPLLILKSGNERVALHVDEILGNREVVVKNIGPQLSRMIGIA 1711 Query: 706 GATVLGDGQIVLIINPLLLS 725 GATVLG G+IVLI+NP+ L+ Sbjct: 1712 GATVLGSGEIVLILNPVPLA 1731 >gi|152980691|ref|YP_001353785.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 712 Score = 209 bits (531), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 123/360 (34%), Positives = 202/360 (56%), Gaps = 13/360 (3%) Query: 372 LQHQKQLLQRVLKTREDLRQQGRTTRELQQELMHARMVKFNSMESRMQHLARQVALETGK 431 +QH++ L + Q R TR+LQ+ +M RM+ + + SR + R +A + GK Sbjct: 356 MQHERLL--------NSVSQLTRNTRDLQEAVMSIRMMPMDYVFSRFPRMVRDLASKLGK 407 Query: 432 PLTLELSDYRLHIDRAILERLMGPLEHLLRNAAVHGIEDAEVRRAAGKPVSGQLRIQASH 491 + +D+ ++ER++ PL HL+RN+ HGIE + R AAGK SGQL + A H Sbjct: 408 KVEFVTHGAATELDKGLIERIVDPLTHLVRNSIDHGIEMPDTRVAAGKSASGQLSLSAGH 467 Query: 492 EGNEAVIRVSDDGRGLDLQAIRDKARQRGLIEAQQISEARLAELIFEPGFSTSTQVSALA 551 +G +I VSDDG GL+ + I KA+Q+GL + + + + +LIF PGFST+ V+ ++ Sbjct: 468 QGGNIIIEVSDDGGGLNRERILAKAKQQGLPVSDDLPDEEVWQLIFAPGFSTAEAVTDVS 527 Query: 552 GRGVGMDVVRAEVAALGGRMTVHSRAGRGVLFTLYLPLSLAVQHVCLLRHGQQPYAIP-S 610 GRGVGMDVV+ + A+GG + + S G G + LPL+LA+ ++ G + Y +P Sbjct: 528 GRGVGMDVVKRNITAMGGSVDIRSSKGYGTTILISLPLTLAILDGMSIKVGDEIYILPLG 587 Query: 611 TLIERVVQLRSDQAQDALQQRALEFNGQRLALYPLHCLLDEPAHPAWPDPSDSAFALLIK 670 ++E + +D + Q + ++ G L L PL+ + P + DPS+ ++++ Sbjct: 588 YVVESLQPELADIKDISGQGQVIKVRGDYLPLIPLYKIF--SIEPRFTDPSE-GIVVILE 644 Query: 671 RGDELMVIMADHVSGNREVVVKPVGPQVATLAGVVGATVLGDGQIVLIIN-PLLLSGSRR 729 + + D + G ++VVVK + +AG+ GAT+LGDG + LII+ LL SR+ Sbjct: 645 SESKKAALFVDDLVGQQQVVVKNLESNYRKVAGISGATILGDGGVALIIDVAALLRSSRQ 704 >gi|152980198|ref|YP_001352775.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 615 Score = 164 bits (414), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 108/345 (31%), Positives = 181/345 (52%), Gaps = 15/345 (4%) Query: 387 EDLRQQGRTTRELQQELMHARMVKFNSMESRMQHLARQVALETGKPLTLELSDYRLHIDR 446 E L + R + ELQ+ + RM + + L R++A + GK + L++ +DR Sbjct: 276 ETLNRASRYSTELQRATLATRMQPVGKLFQKFPRLVRELAKDLGKDVELQIEGAETEVDR 335 Query: 447 AILERLMGPLEHLLRNAAVHGIEDAEVRRAAGKPVSGQLRIQASHEGNEAVIRVSDDGRG 506 +++ L PL H+LRN+ HGIE+A VR +GKP + ++A E + +I +SDDG+G Sbjct: 336 VVVDSLYDPLVHMLRNSLDHGIEEAAVRAKSGKPAKSTILLKAWQEASSVMIELSDDGKG 395 Query: 507 LDLQAIRDKARQRGLI--EAQQISEARLAELIFEPGFSTSTQVSALAGRGVGMDVVRAEV 564 +D Q +R KA +GLI A Q S+ + +L+F PGFST ++++GRGVGMDVV+ V Sbjct: 396 MDGQQLRAKAISKGLISDNAAQ-SQEEMLQLVFLPGFSTKEVANSVSGRGVGMDVVKTAV 454 Query: 565 AALGGRMTVHSRAGRGVLFTLYLPLSLAVQHVCLLRHGQQPYAIPSTLIERVVQLRSDQA 624 G +T+ S G G F++ LP+ L++ L+R A+P +++RVV+L ++ Sbjct: 455 EKHRGAITIDSVLGAGTRFSIRLPIELSIVPTMLVRSSDAALALPMAVVQRVVEL-PEEF 513 Query: 625 QDALQQRALEFNGQRLALYPLHCLLDEPAHPAWPDPSDSAFALLIKRGDELMVIMADHVS 684 + L G+ L P+ L A+ + A + ++ V Sbjct: 514 EQVGGAPVLRDQGRPL---PVRSLAGALAYEVGVEKVGIVIA-----APQPYILSVGMVE 565 Query: 685 GNREVVVKPVGPQVATLAGVVGATVLGDGQIVLIIN-PLLLSGSR 728 G ++V+KP+ T+ G+ G +G++VL++ LL G R Sbjct: 566 GTADLVIKPM--TAITVPGIAGTARSAEGELVLVVGLSFLLEGCR 608 >gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthinobacterium sp. Marseille] Length = 756 Score = 156 bits (395), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 106/334 (31%), Positives = 170/334 (50%), Gaps = 6/334 (1%) Query: 390 RQQGRTTRELQQELMHARMVKFNSMESRMQHLARQVALETGKPLTLELSDYRLHIDRAIL 449 R+ ++ L E + RM F + R V GK + LE+ IDR IL Sbjct: 272 RRSVNLSQRLYDEALACRMRPFADGTHGYARMVRDVGHALGKSVRLEIIGNATQIDRDIL 331 Query: 450 ERLMGPLEHLLRNAAVHGIEDAEVRRAAGKPVSGQLRIQASHEGNEAVIRVSDDGRGLDL 509 E+L P+ HLLRNA HGIE+ + R+AAGKP G + ++A H ++ VSDDG G+DL Sbjct: 332 EKLEAPIGHLLRNAIDHGIENPQQRKAAGKPEQGLITLEARHSAGMLLVNVSDDGAGIDL 391 Query: 510 QAIRDKARQRGLIEAQQISE---ARLAELIFEPGFSTSTQVSALAGRGVGMDVVRAEVAA 566 +R +R L A +++ A L E + P FS V+ ++GRGVG+DVV + Sbjct: 392 DQLRATIIERKLSNADTVAQLSEAELLEFLLLPSFSLRDTVTDISGRGVGLDVVSDMLKQ 451 Query: 567 LGGRMTVHSRAGRGVLFTLYLPLSLAVQHVCLLRHGQQPYAIPSTLIERVVQLRSDQAQD 626 + G + + S +G F + LPL+L+V L+ ++PYA P + R ++LR DQ Sbjct: 452 VRGTIRISSTPQQGTRFQMQLPLTLSVIRSLLVTINEEPYAFPLAYVNRTLELRRDQLAM 511 Query: 627 ALQQRALEFNGQRLALYPLHCLLDEPAHPAWPDPSDSAFALLIKRGDELMVIMADHVSGN 686 Q+ F+G+++ L H +L + A D ++I + + D G Sbjct: 512 LEGQQHFTFDGRQIGLVSAHQILQKGELRA---KDDLVSVVVIGDHEHTYGLAVDDFLGE 568 Query: 687 REVVVKPVGPQVATLAGVVGATVLGDGQIVLIIN 720 R +VV+P+ ++ + V+ ++ DG VLI++ Sbjct: 569 RMLVVQPLDNRLGKVPNVLAGALMEDGDPVLILD 602 >gi|152981669|ref|YP_001353298.1| chemotaxis related protein [Janthinobacterium sp. Marseille] Length = 806 Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/117 (44%), Positives = 72/117 (61%), Gaps = 1/117 (0%) Query: 458 HLLRNAAVHGIEDAEVRRAAGKPVSGQLRIQASHEGNEAVIRVSDDGRGLDLQAIRDKAR 517 HL+RNA HGIE EVR A GKP +G++ + + I + DDGRGL L+ IR A Sbjct: 630 HLIRNAMDHGIETPEVRVALGKPEAGKISLGMDMDEKMLNITLRDDGRGLALKRIRQIAL 689 Query: 518 QRGLIEA-QQISEARLAELIFEPGFSTSTQVSALAGRGVGMDVVRAEVAALGGRMTV 573 +GL +A Q+ + A LI + GFST+ +VS ++GRGVGMD V A V+ G + + Sbjct: 690 DKGLSDAPDQLDDLAAARLILQAGFSTADKVSEVSGRGVGMDAVLAFVSRENGSIDI 746 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.132 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,393,404 Number of extensions: 54497 Number of successful extensions: 288 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 280 Number of HSP's successfully gapped: 5 Length of query: 739 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 649 Effective length of database: 888,291 Effective search space: 576500859 Effective search space used: 576500859 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)