BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3739.p
         (305 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980592|ref|YP_001352017.1| transporter of the DMT superfam...   322   2e-89

>gi|152980592|ref|YP_001352017.1| transporter of the DMT superfamily
           [Janthinobacterium sp. Marseille]
          Length = 304

 Score =  322 bits (824), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 173/304 (56%), Positives = 220/304 (72%), Gaps = 6/304 (1%)

Query: 6   MLVASFLFAVMGVCVKLAGSYYTTSEIVLCRGVIGVLFILGLIRLRGGTLRTPFPRDHFI 65
           MLVA+ +F++MGVCVKLA   Y+ +EI++ RG IGV+FI  LI  +GG+LRT     H  
Sbjct: 1   MLVATLMFSIMGVCVKLASETYSVAEIIMYRGFIGVIFIYILILQQGGSLRTHLIWQHLW 60

Query: 66  RGGVGVISLWMWFYSFSLLPVATATTLNYMSSIWIAVMLFAAGWWQGNKKFEWGLAGTVA 125
           R  VGV +LW+WF +  LLP+ATA TLNYM+ IWI+ +LF A W  G ++FEWGL   + 
Sbjct: 61  RCVVGVTALWLWFCAIGLLPLATAMTLNYMAPIWISGILFVAAWRAGKRRFEWGLVLAIT 120

Query: 126 LSFVGVALLMRPSLNAEQLLGGAISLASGVLSALVYLQVRKLGLLGEPEYRVVFYFSATG 185
            SFVGV LL+RPS++A+Q LGG + L SG LSAL YLQVR LG LGEPE RVVFYFSATG
Sbjct: 121 ASFVGVTLLLRPSIHADQWLGGFLGLCSGALSALAYLQVRHLGQLGEPESRVVFYFSATG 180

Query: 186 VLAGLIGSVV-----TGRVPLWHSHSWLGVLLVVMIGLTATTAQIAMTRAYRLGNTLVTA 240
            +AGL G +         + L  SHS  G+ L++ IG+ A  AQ+AMTRAYRLGNTLVTA
Sbjct: 181 FIAGLAGCLFGPGLHGESISLLRSHSTYGMFLLLSIGVFAAIAQMAMTRAYRLGNTLVTA 240

Query: 241 NLQYTGIVFSSLFGVLIWNDAPGWIGWLGMAVILASGMLATYRNQKQTQAEARNVPKVDP 300
           NLQYTGIVFSS++GVLIW+D  G+  WLG+A+IL SG++AT+ N + + A  + V   DP
Sbjct: 241 NLQYTGIVFSSIWGVLIWSDILGFFSWLGIAIILVSGIVATFYNIRNS-ATVKAVTPADP 299

Query: 301 IATE 304
           I+TE
Sbjct: 300 ISTE 303


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.326    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 681,252
Number of extensions: 27770
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 222
Effective length of database: 914,170
Effective search space: 202945740
Effective search space used: 202945740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)