BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3735.p
         (621 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979790|ref|YP_001352021.1| 1-deoxy-D-xylulose-5-phosphate ...  1050   0.0  

>gi|152979790|ref|YP_001352021.1| 1-deoxy-D-xylulose-5-phosphate
           synthase [Janthinobacterium sp. Marseille]
          Length = 621

 Score = 1050 bits (2714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/619 (82%), Positives = 572/619 (92%)

Query: 2   LLTTINDPADLRRLTRHQLKPLAEELRGFLLDSVSKTGGHLSSNLGTVELTIALHYVFNT 61
           LL TINDPAD+R+LTR QLK LA+ELR F+L+SVS TGGHLSSNLGTVELTIALH VFNT
Sbjct: 3   LLETINDPADVRQLTRPQLKQLADELRAFVLESVSATGGHLSSNLGTVELTIALHNVFNT 62

Query: 62  PEDRIVWDVGHQTYPHKILTGRRERMATLRQQEGISGFPRRIESQYDTFGTAHSSTSISA 121
           PEDRI+WDVGHQTYPHKILTGRR++M +LRQ +GISGFPRR ES YDTFGTAHSSTSISA
Sbjct: 63  PEDRIIWDVGHQTYPHKILTGRRDQMHSLRQIDGISGFPRRDESPYDTFGTAHSSTSISA 122

Query: 122 ALGMALAAKTQGSERHAIAVIGDGAMTAGMAFEALNNAGVHEDVKLLVILNDNDMSISPP 181
           ALGMALAAKT+G +RHAIAVIGDGAMTAGMAFEA+NNAG+H+D+ LLV+LNDNDMSISPP
Sbjct: 123 ALGMALAAKTKGEDRHAIAVIGDGAMTAGMAFEAMNNAGIHDDINLLVVLNDNDMSISPP 182

Query: 182 VGALNRYLARLMSGKFYATARDVGKSVLPGPVLELAKRLEEHAKGMVVPATMFEEFGFNY 241
           VGALNRYLARLMSG+FYA A++VGK+VLP P+ ELAKR EEHAKGM+VPATMFEEFGFNY
Sbjct: 183 VGALNRYLARLMSGQFYAAAKNVGKTVLPAPMRELAKRFEEHAKGMIVPATMFEEFGFNY 242

Query: 242 IGPIDGHDLDSLIPTLQNLKHLKGPQFLHVVTKKGQGYKLAEADPVLYHGPGKFNPSEGI 301
           IGPIDGHDLDSLIPTLQNLK+LKGPQFLHVVT+KGQGYKLAEADPVLYHGPGKF+P+EGI
Sbjct: 243 IGPIDGHDLDSLIPTLQNLKNLKGPQFLHVVTRKGQGYKLAEADPVLYHGPGKFDPAEGI 302

Query: 302 KPSAGGKLTYTQVFGQWLCDMGAADDKLVGITPAMREGSGMVAFEKAFPNRYYDVGIAEQ 361
           KPS   K+TYT VFG WLCDM AAD +LVGITPAMREGSGMV FE+ FP+RYYDVGIAEQ
Sbjct: 303 KPSTAKKVTYTSVFGDWLCDMAAADKRLVGITPAMREGSGMVEFERRFPDRYYDVGIAEQ 362

Query: 362 HAVTFAAGMACEGMKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAGLVGADGATH 421
           HAVTFAAGMACEG+KPVVAIYSTFLQR YDQLIHDVALQNLDVTFALDR+GLVGADGATH
Sbjct: 363 HAVTFAAGMACEGLKPVVAIYSTFLQRGYDQLIHDVALQNLDVTFALDRSGLVGADGATH 422

Query: 422 AGNYDLAFLRCIPNMVVMAASDENECRQMLSTAYQYPGPAAVRYPRGAGIGAAVEKTLDT 481
           AGNYD+A+LRCIPNMVVMAASDENECRQMLST + Y GPAAVRYPRG GIGA V   L T
Sbjct: 423 AGNYDIAYLRCIPNMVVMAASDENECRQMLSTGFDYQGPAAVRYPRGGGIGAKVGTDLAT 482

Query: 482 LPLGRGEIRRQGKDVAILAFGSLLAPALGAGDKLDATVANMRFIKPLDVELVRQLAASHE 541
           +PLG GEI+R+GK +AILAFG+++AP+L AG++LDATVANMRFIKPLDVEL+++LAA+H+
Sbjct: 483 IPLGTGEIKREGKGIAILAFGTMVAPSLSAGEELDATVANMRFIKPLDVELLKRLAATHD 542

Query: 542 ALVTVEEGCIMGGAGAAVSEALAAAGINKPILHLGLPDRFIDHGDVAQLLAQCGLDADGI 601
           ALVTVEEG IMGGAGAAV+EA+AAAGI KP+L+LGLPD+FIDHGD  +LLA CGLDA GI
Sbjct: 543 ALVTVEEGSIMGGAGAAVAEAMAAAGIVKPLLNLGLPDQFIDHGDAGKLLALCGLDAAGI 602

Query: 602 AQSIAQRFGKDQPKLVVNN 620
           A SI +RFGKDQP+LVVN 
Sbjct: 603 ATSIRKRFGKDQPRLVVNQ 621


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,511,519
Number of extensions: 66909
Number of successful extensions: 197
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 532
Effective length of database: 891,988
Effective search space: 474537616
Effective search space used: 474537616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)