BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3732.p (296 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980163|ref|YP_001352024.1| transcriptional regulator [Jant... 445 e-126 gi|152982782|ref|YP_001354764.1| LysR family transcriptional reg... 214 4e-57 gi|152983043|ref|YP_001352606.1| LysR family transcriptional reg... 158 3e-40 gi|152980802|ref|YP_001354168.1| LysR family transcriptional reg... 151 5e-38 gi|152980836|ref|YP_001354012.1| LysR family transcriptional reg... 103 2e-23 >gi|152980163|ref|YP_001352024.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 445 bits (1145), Expect = e-126, Method: Compositional matrix adjust. Identities = 209/293 (71%), Positives = 250/293 (85%), Gaps = 1/293 (0%) Query: 1 MATRLPPVHALSAFEAAARHNSFAVAAEELCITPSALSHRIRLLEDFVGERLFYRDGRSI 60 MA RLPPVHALSAFEAAARH SFA+AAEELCITPSA SHRIRLLE+FVGERLF RDGRS+ Sbjct: 1 MAIRLPPVHALSAFEAAARHGSFAIAAEELCITPSAFSHRIRLLEEFVGERLFLRDGRSV 60 Query: 61 GLSEFGRRYLDVVRSALRTLTDFPMPHRNAAMQPKIKVMLPPTFARHLLMPRIADFTQRH 120 L+EFGRRYLDVVR ALR+L DFP+PHR+ QP++K+ +PPTFAR+L +P +ADFT + Sbjct: 61 SLTEFGRRYLDVVRDALRSLADFPLPHRHPLAQPRVKITVPPTFARYLFLPHLADFTALY 120 Query: 121 PEIVVELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPGYLKTLPPL 180 P+I +E++LSVPLYD++LSE+D+EIRFGAG YP+ TEKLFEEP F V SP YL+ + L Sbjct: 121 PDITIEVFLSVPLYDMALSETDLEIRFGAGKYPDTTTEKLFEEPVFPVVSPAYLEKIGGL 180 Query: 181 KTPTDLQHATLLRSALEPWQPWFEAAGLKEWVEPSSGLRVDDLGLLLEAVRHGYGIGLTR 240 KTP DLQ A LLRSALEPWQ WFE AGL +W EP++GLR+DDLGLLLEAVRHGYG+ LTR Sbjct: 181 KTPADLQKAQLLRSALEPWQAWFEVAGL-DWPEPATGLRIDDLGLLLEAVRHGYGVALTR 239 Query: 241 QHFAEELLARGEIVELFDVRLRTPPHAYYVVYERAVRERPEVDTFINWMQNAF 293 +HFAEE++A GE+V LFD++L TP HAYY+VYE++VRERPEV F+NWM F Sbjct: 240 KHFAEEMIANGEVVPLFDIQLTTPQHAYYMVYEQSVRERPEVVLFMNWMMERF 292 >gi|152982782|ref|YP_001354764.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 321 Score = 214 bits (546), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 116/289 (40%), Positives = 168/289 (58%), Gaps = 3/289 (1%) Query: 4 RLPPVHALSAFEAAARHNSFAVAAEELCITPSALSHRIRLLEDFVGERLFYRDGRSIGLS 63 RLPP+ L AFEA AR S + A ELCI+PSA+SHRI+ LE+ +LF + L+ Sbjct: 7 RLPPIPCLIAFEARARLGSGVLVARELCISPSAVSHRIKQLEEATNLQLFRKTSGEAVLT 66 Query: 64 EFGRRYLDVVRSALRTLTDFP-MPHRNAAMQPKIKVMLPPTFARHLLMPRIADFTQRHPE 122 G+ YL+ VR+AL TL+ F P N + ++++ PPTFA +++PR++ + P Sbjct: 67 ADGQAYLEAVRNALNTLSHFGRNPASNTKTRKQLRIAAPPTFAYQIIIPRLSLLQEHFPA 126 Query: 123 IVVELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPGYLKTLPPLKT 182 + EL LSVPL L +SD+EIRFG G+YP ++ +E + SP YL P + Sbjct: 127 LRFELQLSVPLVGLKADDSDIEIRFGIGHYPGYHVTRILDEDVLPMCSPEYLAQHGPFEN 186 Query: 183 PTDLQHATLLRSALEPWQPWFEAAGLKEWVEPSSGLRVDDLGLLLEAVRHGYGIGLTRQH 242 DLQ ATLLR +EPW PWF+AAGL +W EP L+ D+G ++A G+GI L R Sbjct: 187 YEDLQRATLLRCTIEPWHPWFQAAGL-DWREPIGTLQFVDIGSCMQAAAWGHGIALARPK 245 Query: 243 FAEELLARGEIVELFDVRLRTPPHAYYVVYERAVRERPEVDTFINWMQN 291 A L A G +V +FD+ + P ++Y+ + E INW+++ Sbjct: 246 MAASLTASGRLVPVFDLAAK-PAYSYFATCLPEALQHTESLEVINWLRS 293 >gi|152983043|ref|YP_001352606.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 158 bits (400), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 97/294 (32%), Positives = 148/294 (50%), Gaps = 11/294 (3%) Query: 8 VHALSAFEAAARHNSFAVAAEELCITPSALSHRIRLLEDFVGERLFYRDGRSIGL---SE 64 ++AL AFEA+ARH SF+ AA EL +TP+A+ ++R LE+++G LFYR G ++ Sbjct: 7 LNALRAFEASARHQSFSAAATELNVTPAAVGQQVRGLEEWLGTPLFYRSGTGTSRLMPTD 66 Query: 65 FGRRYLDVVRSALRTLTDFPMPHRNAAMQPKIKVMLPPTFARHLLMPRIADFTQRHPEIV 124 +R L +R+ L+ + A+ + V + P FA LMPRI F Q +P+ Sbjct: 67 TAQRALPDIRAGFDKLSIGLERLKQASTGGALTVTVSPAFAAKWLMPRIDRFHQAYPQTD 126 Query: 125 VELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPGYLKTLPPLKTPT 184 + L ++ D S DV +R+G+G++P + KL +E + V SP YLK P P Sbjct: 127 LRLDTNLKALDFLASGIDVGVRYGSGDWPGLAAIKLADEEIYPVCSPSYLKRHGPFVDPA 186 Query: 185 DLQHATLLRS-------ALEPWQPWFEAAGLKEWVEPSSGLRVDDLGLLLEAVRHGYGIG 237 L TL+ + W+ W +AAG V+ GL++++ +L+A GI Sbjct: 187 ALAGHTLIHDLSMQNHPGFQTWRSWLDAAGFPS-VQSERGLQINNSAAVLQAAIDNQGIA 245 Query: 238 LTRQHFAEELLARGEIVELFDVRLRTPPHAYYVVYERAVRERPEVDTFINWMQN 291 L R E L G +V LF+ AYY+VY E P V F W+ + Sbjct: 246 LGRSVMMREDLTVGRLVRLFETISSPSKLAYYIVYRPECAELPRVAAFREWLMS 299 >gi|152980802|ref|YP_001354168.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 311 Score = 151 bits (382), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 155/293 (52%), Gaps = 13/293 (4%) Query: 8 VHALSAFEAAARHNSFAVAAEELCITPSALSHRIRLLEDFVGERLFYRD--GRS-IGLSE 64 ++AL AFEA+ARH SF+ AA EL +TP+A+ +R LED++G LF R GR+ + +E Sbjct: 7 LNALRAFEASARHQSFSAAAAELNVTPAAVGQLVRSLEDWLGTPLFNRSASGRARLIATE 66 Query: 65 FGRRYLDVVRSALRTLTDFPMPHRNAAMQPKIKVMLPPTFARHLLMPRIADFTQRHPEIV 124 +R L +R+ L L+ + A+ + V + P FA L+PRI F P+ Sbjct: 67 AAQRALPEIRAGLDKLSLGLERLKEGAINGVLTVTVSPAFAAKWLLPRIDTFQAAWPDTD 126 Query: 125 VELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPGYLKTLPPLKTPT 184 V L S+ D D+ +R+G G++ +I EKL +E + V SP L+ L+ PT Sbjct: 127 VRLDTSLKPVDFVALGIDIGVRYGNGDWAGLIAEKLLDEEIYPVCSPLLLRQKQRLRKPT 186 Query: 185 DLQHATLLRS-ALE------PWQPWFEAAGLKEWVEPSSGLRVDDLGLLLEAVRHGYGIG 237 DL TL+ ++E W+ W + AG+ E G+R+++ +L+A G GI Sbjct: 187 DLGKETLIHDLSIESHKDFPSWKQWLKVAGVDH-TETMRGMRINNSAAVLQAAIDGQGIA 245 Query: 238 LTRQHFAEELLARGEIVELF-DVRLRTPPHAYYVVYERAVRERPEVDTFINWM 289 L R A + +A +V LF D++ T P AY++VY P + F +W+ Sbjct: 246 LARSVMARDDVAASRLVRLFPDIKF-TSPLAYFIVYRAERASLPRLAAFRDWL 297 >gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 309 Score = 103 bits (256), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/260 (31%), Positives = 123/260 (47%), Gaps = 13/260 (5%) Query: 10 ALSAFEAAARHNSFAVAAEELCITPSALSHRIRLLEDFVGERLFYRDGRSIGLSEFGRRY 69 ++ F AA SF AA +TP+A+S I LE +G RLF R R I L++ GR Y Sbjct: 12 SIELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTRQIRLTDGGRVY 71 Query: 70 LDVVRSALRTLTDFPMPHRNAAMQPK--IKVMLPPTFARHLLMPRIADFTQRHPEIVVEL 127 + R AL L D ++P +++ +P + + L+P + +F QR+P++ VE+ Sbjct: 72 FEQCREALAQLVDAERQVSGGQLKPAGLLRISVPTPYGHYRLLPLLPEFRQRYPDVQVEV 131 Query: 128 YLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPGYLKTLPPLKTPTDLQ 187 ++S D + D+ IR A N+I KL E VA+P YLK KT DLQ Sbjct: 132 HISNRNIDFAEEAYDLAIRGRAPTDSNLIARKLEEAELVLVAAPSYLKRAGKPKTLEDLQ 191 Query: 188 HATLLRSALE------PW--QPWFEAAGLKEWVEPSSGLRV--DDLGLLLEAVRHGYGIG 237 ++ L PW P + G + + G D LG++ A R G G+ Sbjct: 192 KHECIQFELPSTGRRIPWVFHPNGKVQGKAVDIMTNGGYSCAEDVLGIVTLA-RSGAGLV 250 Query: 238 LTRQHFAEELLARGEIVELF 257 T + E+ L G +VEL Sbjct: 251 QTYRFIVEDDLREGRLVELL 270 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.139 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 721,440 Number of extensions: 30442 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 26 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 26 Length of query: 296 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 213 Effective length of database: 914,170 Effective search space: 194718210 Effective search space used: 194718210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)