BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3730.p
         (362 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980441|ref|YP_001352026.1| glycolate oxidase, subunit GlcE...   418   e-118
gi|152980854|ref|YP_001353872.1| FAD/FMN-containing dehydrogenas...    60   2e-10

>gi|152980441|ref|YP_001352026.1| glycolate oxidase, subunit GlcE
           [Janthinobacterium sp. Marseille]
          Length = 351

 Score =  418 bits (1075), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/352 (63%), Positives = 276/352 (78%), Gaps = 8/352 (2%)

Query: 13  ETVLVSFRERILAG----RPLQIRGGGTKDWYGQTPSGEVLDTRAYRGIVDYEPTELVIT 68
           E V+  F+ERILA     +PL+IRGGGTKDWYGQTP GE+LDTRAY G+V Y+PTELVIT
Sbjct: 2   EQVIEQFKERILAAASNKQPLRIRGGGTKDWYGQTPVGELLDTRAYSGVVAYDPTELVIT 61

Query: 69  ARCGTPLSEIDAALAEHNQMLAWEPPRFGGAATVGGMVAAGLSGPARASAGAVRDFVLGA 128
            R GTPL+E++A LAE NQMLA+EPP FG  AT+GGMVA+GLSGP R + GA RDFVLGA
Sbjct: 62  VRSGTPLAEVEAILAEQNQMLAFEPPHFGPGATIGGMVASGLSGPGRVAVGATRDFVLGA 121

Query: 129 VLMDAQGEQLHFGGQVMKNVAGYDIARLLAGSMGTLGLILQVSLKVLPRPFASSTRVFEI 188
           VLMD +GE LHFGGQVMKNVAGYD++R+LAGS+GTLGL+L++S+KVLP+P+A ++   E+
Sbjct: 122 VLMDGKGESLHFGGQVMKNVAGYDVSRMLAGSLGTLGLLLELSVKVLPKPYAQTSLRLEM 181

Query: 189 NQEGALRLLNQSAGQPLPLVASAWLDNVLTIRLAGAQAAVDSAIAKLGGTELIHSEDVWT 248
           +++ A+R LN+  GQPLP+ ASAW D  L +RL+GA+AA+ +A   +GG E +  +D W 
Sbjct: 182 DEKDAIRRLNEWGGQPLPISASAWCDGALMVRLSGAKAALAAAQQTIGGEE-VDGDDFWI 240

Query: 249 DLREQTHPFFADPQAPLWRLSVPSVAPPIDLPGRQLIEWGGAQRWLRPDSRLDAVSIRAA 308
            +REQ++ FF      LWRLSVPS   PI L G+QLIEWGGAQRWLR  S   A +IR A
Sbjct: 241 AMREQSNEFFTQSDV-LWRLSVPSTTAPIALNGQQLIEWGGAQRWLR--SNESAETIRTA 297

Query: 309 ALAVGGHASLHRGGDKAIGVFHPLQPAVEKIHRNLKQQFDPRGIFNPGRLYA 360
           A   GGHA+L RGGDKA+GVFHPL PA+ +IH+N+K  FDP GIFNPGR+YA
Sbjct: 298 AALAGGHATLFRGGDKAVGVFHPLPPALGRIHQNMKNNFDPDGIFNPGRMYA 349


>gi|152980854|ref|YP_001353872.1| FAD/FMN-containing dehydrogenase
           [Janthinobacterium sp. Marseille]
          Length = 468

 Score = 59.7 bits (143), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 81/180 (45%), Gaps = 14/180 (7%)

Query: 28  PLQIRGGGTKDWYGQTP----SGEVLDTRAYRGIVDYEPTELVITARCGTPLSEIDAALA 83
           P+  +GG T    G  P    +  +L       I   +P    +T   G  L  I AA +
Sbjct: 64  PMVPQGGNTGLVLGGIPDESGTAAILSLTRLNRIRHVDPLNNTVTVEAGCILKNIQAAAS 123

Query: 84  EHNQM----LAWEPPRFGGAATVGGMVAAGLSGPARASAGAVRDFVLGAVLMDAQGEQLH 139
           +  ++    LA E     G+ T+GG ++    G A    G  R+  LG  ++  QG+  H
Sbjct: 124 DAGRLFPLSLAAE-----GSCTIGGNLSTNAGGTAVLRYGNTRELCLGLEVVTPQGDIWH 178

Query: 140 FGGQVMKNVAGYDIARLLAGSMGTLGLILQVSLKVLPRPFASSTRVFEINQ-EGALRLLN 198
               + K+  GYD+  L  G+ GTLG I    LK+ P+P A  T +  +   + ALRLL+
Sbjct: 179 GLRGLRKDNTGYDLRDLYIGAEGTLGFITAAVLKLFPQPRAQLTALAALRTPDDALRLLS 238


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 890,174
Number of extensions: 38373
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 2
Length of query: 362
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 278
Effective length of database: 910,473
Effective search space: 253111494
Effective search space used: 253111494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)