BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3729.p
         (413 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980162|ref|YP_001352027.1| glycolate oxidase iron-sulfur s...   671   0.0  
gi|152981534|ref|YP_001352125.1| glycolate oxidase subunit [Jant...    67   3e-12

>gi|152980162|ref|YP_001352027.1| glycolate oxidase iron-sulfur
           subunit [Janthinobacterium sp. Marseille]
          Length = 410

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/413 (76%), Positives = 355/413 (85%), Gaps = 4/413 (0%)

Query: 1   MQTNLADFIRNTQAGQEADSILRSCVHCGFCTATCPTYQLLGNELDGPRGRIYLIKQVLE 60
           MQTNLADFI++T+ G EAD+ILRSCVHCGFCTATCPTYQLLG+ELDGPRGRIYLIKQVLE
Sbjct: 1   MQTNLADFIKDTREGHEADAILRSCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLE 60

Query: 61  GKPATAATQSHLDRCLTCRNCESTCPSGVQYGRLVDIGRKVVEQQVPRPLGQRLMRTALK 120
           GK  TA TQ HLDRCLTCRNCE+TCPSGV+YGRL+DIGRKVVE QVP    Q+L RTALK
Sbjct: 61  GKKPTAKTQLHLDRCLTCRNCETTCPSGVKYGRLIDIGRKVVEDQVPYSFSQKLKRTALK 120

Query: 121 ELVPRKWIFRPAMKAGQLVRPLLPKLLQNKVPLPQQAGAWPTRSHARQMLYLEGCVQPAM 180
           EL+PRKW+F PAMK GQL RPLLP+ LQNKVP  + AG+WPTR HAR+ML L+GCVQPAM
Sbjct: 121 ELLPRKWLFTPAMKTGQLFRPLLPQALQNKVPHRENAGSWPTRDHARKMLLLDGCVQPAM 180

Query: 181 SPNINSATARVLDALGVQLFAPPKAGCCGAIRYHMNDQDGGLDDMRRNIDAWWPYIEGRD 240
           SPNIN+ATARVLDALGVQL   PKAGCCGAIR+H+ND DG LDDMRRNIDAWWP ++   
Sbjct: 181 SPNINAATARVLDALGVQLVVAPKAGCCGAIRHHLNDHDGALDDMRRNIDAWWPLVQA-- 238

Query: 241 GIRADTIVMNASGCGATVKEYGHLLQHDPAYAEKARRISRMTRDISEILPEFEQELKHLL 300
              A+ IVM ASGCGATVK+YGHLL+ DPAYAEKA  IS +T+D+SEI+P FE EL+  L
Sbjct: 239 --GAEAIVMTASGCGATVKDYGHLLEADPAYAEKAAVISSLTKDLSEIMPAFEAELEGKL 296

Query: 301 KHFNGKRVAYHPPCTLQHGQQIRGKVEGILRAAGVDVQLCADSHLCCGSAGTYSILQPEL 360
                KRVAYHPPCTLQHGQQIRGKVEG+LRA GVDVQLC DSHLCCGSAGTYS++QPEL
Sbjct: 297 NGKISKRVAYHPPCTLQHGQQIRGKVEGVLRAVGVDVQLCGDSHLCCGSAGTYSVMQPEL 356

Query: 361 SYRLRDNKINKLQATDPDMIVTGNIGCVTHLQSGTDTPVRHWIELLDSALQQT 413
           SY+LRDNK+ KL  T  +MIV+ NIGC+THLQSGTDTPV+HWIEL+DSAL  T
Sbjct: 357 SYQLRDNKLAKLAETKAEMIVSANIGCLTHLQSGTDTPVKHWIELIDSALTAT 409


>gi|152981534|ref|YP_001352125.1| glycolate oxidase subunit
           [Janthinobacterium sp. Marseille]
          Length = 1000

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 98/428 (22%), Positives = 170/428 (39%), Gaps = 61/428 (14%)

Query: 25  CVHCGFC-----TATCPTYQLLGNELDGPRGRIYLIKQVLEGKP-----ATAATQSHLDR 74
           C + G C        CP+Y++  +E    RGR   ++  + G+      A+A  +  LD 
Sbjct: 591 CNNNGHCRKFDADTMCPSYRITKDERHVTRGRANTLRLAISGQLGDDGLASAEVKEVLDL 650

Query: 75  CLTCRNCESTCPSGVQYGRLVDIGRKVVEQQVPRPLGQRLMRTALKELVPRKWIFRPAMK 134
           C++C+ C+  CP+GV   ++     K+  +          +R  +   +PR   +  A +
Sbjct: 651 CVSCKGCKRDCPTGVDMAKV-----KIEARAAWASRHGSTLREKMVAFMPRYAPY--ASR 703

Query: 135 AGQLVR-----PLLPKLLQNKVPL-PQQA--------------GAWPTRSHARQMLYLEG 174
            G L+      P +   L+  + L PQ+A              G+  T  +   +L+++ 
Sbjct: 704 IGGLLAIGDKLPFVSSWLKKSLGLAPQRAFPRFRTSFLSQLGTGSKSTSGNKEVLLFVD- 762

Query: 175 CVQPAMSPNINSATARVLDALGVQLFAPPKAG----CCGAIRYHMNDQDGGLDDMRRNID 230
                M P    A   VL+A G  +    K G    CCG         D    + RR +D
Sbjct: 763 TFNNYMEPENARAAQAVLEAAGYTVHFNVKEGERPLCCGRTYLSAGLVDEAKQEARRTLD 822

Query: 231 AWWPYIEGRDGIRADTIVMNASGCGATVKEYGHLLQHDPAYAEKARRISRMTRDISEIL- 289
           A  PYI      R   IV     C  ++++    L +   Y E+A++++ M     E L 
Sbjct: 823 ALMPYIN-----RGVAIVGLEPSCLLSLRD--EFLSY--GYGEEAKKLASMAWLFEEFLV 873

Query: 290 -PEFEQELKHLLKHFNGKRVAYHPPCTLQHGQQIRGKVEGILR-AAGVDVQLCADSHLCC 347
             +    L+  LK     +   H  C  +    +R  V+ +L+    +DV L   S  CC
Sbjct: 874 NEKAAGRLQLDLKPLPVSKAMVHGHCHQKAFNAVR-PVQTVLQWIPQLDVALIESS--CC 930

Query: 348 GSAGT--YSILQPELSYRLRDNKIN-KLQATDPD-MIVTGNIGCVTHLQSGTDTPVRHWI 403
           G AG+  Y     E S  + + K+   ++A + + + V     C   +  GT     H  
Sbjct: 931 GMAGSFGYEAEHYEASQAMGELKLFPAIRAAEANTLFVADGTSCRHQIADGTQENAMHVA 990

Query: 404 ELLDSALQ 411
            +L  +L+
Sbjct: 991 RVLADSLR 998


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 966,143
Number of extensions: 40397
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 2
Length of query: 413
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 327
Effective length of database: 903,079
Effective search space: 295306833
Effective search space used: 295306833
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)