BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3726.p (555 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980122|ref|YP_001351965.1| long-chain fatty-acid-CoA ligas... 165 8e-42 gi|152980534|ref|YP_001355180.1| propionyl-CoA synthetase [Janth... 116 3e-27 gi|152980721|ref|YP_001352572.1| acetyl-CoA synthetase [Janthino... 106 4e-24 >gi|152980122|ref|YP_001351965.1| long-chain fatty-acid-CoA ligase [Janthinobacterium sp. Marseille] Length = 560 Score = 165 bits (417), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 142/520 (27%), Positives = 233/520 (44%), Gaps = 45/520 (8%) Query: 59 DRIICWQEINARVDALAHALTRRGVKKGDKMLVHSRNNQQIFESAWAAFKMGVVWVPTNF 118 D+ + ++E++ + L G++KG ++ + N Q + A + G V V N Sbjct: 46 DKALTYREVDHLSTEVGAWLQSIGLQKGARVALMMPNVLQYPIAIAAVLRAGYVIVNVNP 105 Query: 119 RITPPEAAYLGQSSGACIMLYDRGFAHYVDAVRAASPTLQHVIAL--------------- 163 P E + SGA ++ FA ++ V AS ++HVI Sbjct: 106 LYKPRELEHQLTDSGAEAIIILENFAATLEKV-IASTQVKHVIVATMGDLFGGLKGGIVN 164 Query: 164 -----------AEARPDELDYEALLAEGDGSPFAEAEVDHQDPLWFFYTSGTTGHPKAGV 212 A + P + ++ +L + G + HQD + YT GTTG K + Sbjct: 165 FVVRHVKKMVPAYSLPQAVPFKEVLRQAAGMTLQRPALGHQDLAFLQYTGGTTGTAKGAM 224 Query: 213 LSHGQMAFVVTNHLADLMPGLNH--QSRSLVVA---PLSH--GAGVHALVNTARGAASIL 265 L+H + V + A + P LN + + L+ PL H ++ T G ++L Sbjct: 225 LTHRNIIANVLQNEAWISPVLNTLPKDKQLIFVCALPLYHIFALTTCGMLGTHLGVMNLL 284 Query: 266 LSSERLVVEEAWQLVEKYRVDNLFTVPTIVKLLVEDASVDRYDHASLKHVIYAGAPMYRA 325 + + R + +L+ KY+V L V T+ L+ + + D + LK G + + Sbjct: 285 IPNPRDIPGFIKELM-KYKVHFLPAVNTLYNGLLNNPDFAKVDFSELKLCNGGGMAVQKV 343 Query: 326 DQVYALKKLGRVLVQYYGLGEVTGNITFLPPYMHFEDDDHPQARVGTCGIPRTGMQIAIL 385 + G + + YGL E + T PP + GT G+P + ++ I+ Sbjct: 344 VNDKWREVTGCAICEGYGLSETSPTATANPPTTN--------EFTGTIGLPVSSTELKII 395 Query: 386 DDDGQSLPPRQTGEICVRGPAVFMGYHNNPEANAKAFKHD-WFHTGDLGHVDEEGFLYIT 444 D D +P GEI +RGP V GY NNP A++ D +F TGD+G +DE GF I Sbjct: 396 DSDDNEVPHGSAGEIAIRGPQVMAGYWNNPVETAQSMTADGFFKTGDIGIMDERGFTKIV 455 Query: 445 GRSSDMYISGGSNVYPREIEEALLTHPAVSEVAVLGVPDPKWGESGLAVIVCKPGQQVDE 504 R DM + G NVYP EIE + HP V E A +GVPD GE+ + + V + + E Sbjct: 456 DRKKDMILVSGFNVYPSEIEGVVAAHPGVLECACIGVPDEHTGEA-VKLFVVRRDPALTE 514 Query: 505 QALLAHLETRIGKYKWPRRFVYWETMPKSGYGKIVKKQIK 544 L+A+ + YK P+ + +PKS GKI++++++ Sbjct: 515 AELMAYCREQFTGYKKPKSIEFRTELPKSNVGKILRRELR 554 >gi|152980534|ref|YP_001355180.1| propionyl-CoA synthetase [Janthinobacterium sp. Marseille] Length = 634 Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 110/457 (24%), Positives = 202/457 (44%), Gaps = 49/457 (10%) Query: 116 TNFRITPPEAAYLGQSSGACIMLYDRGFAHYVDAVRAASPTLQHVIALAEARPDELDYEA 175 T ++ EA L + A +++ DRG A + E R ++DY Sbjct: 177 TPYKCLLDEAIALAEHKPAHVLMLDRGLAP---------------MKTIEGR--DVDYAT 219 Query: 176 LLAEGDGSPFAEAEVDHQDPLWFFYTSGTTGHPKAGVLSHGQMAFVVTNHLADLM----P 231 L + + A ++ P + YTSGTTG PK + G A + + DL+ P Sbjct: 220 LRRQHMDAVVPVAWLESNAPSYILYTSGTTGKPKGVLRDVGGYAVALATSM-DLIFCGKP 278 Query: 232 GLNHQSRSLVVAPLSHGAGVHALVNTARGAASILLSSERLVVEEA--WQLVEKYRVDNLF 289 G S + + H ++ + G +IL + + + W +VEKY+V + Sbjct: 279 GETFFCTSDIGWVVGHSYIIYGPLLA--GMTTILYEGLPIRPDASIWWSIVEKYKVTRMS 336 Query: 290 TVPTIVKLLVED--ASVDRYDHASLKHVIYAGAPMYRADQVYALKKLGRVLVQYYGLGEV 347 + PT +++L + + ++D +SLK + AG P+ + + LG ++ Y E Sbjct: 337 SAPTAIRVLKKQPLELLQKHDLSSLKALYLAGEPLDQTTSDWISGVLGVPVIDNYWQTET 396 Query: 348 TGNITFLPPYMHFEDDDHPQARVGTCGIPRTGMQIAILDDD-GQSLPPRQTGEICVRGP- 405 I + + D P R G+ G P G + +++++ G+ P + G + + GP Sbjct: 397 GWPIISVAKGV----GDKP-TRSGSPGQPMYGYKAKVINEETGEECAPNEKGVVIIEGPL 451 Query: 406 ------AVFMGYHNNPEANAKAFKHDWFHTGDLGHVDEEGFLYITGRSSDMYISGGSNVY 459 ++ + FK + + T D G D +G+ +I GR+ D+ G + Sbjct: 452 PPGCLQTLYGDDQRFVSTYWRNFKREAYSTFDWGIRDADGYYFILGRTDDVINVAGHRLG 511 Query: 460 PREIEEALLTHPAVSEVAVLGVPDPKWGESGLAVIVCKPGQQVD--------EQALLAHL 511 REIEE++ +H VSEVAV+GV +P G+ +A ++ K E ++ + Sbjct: 512 TREIEESISSHANVSEVAVVGVENPIKGQCAVAFVILKNAAAAADPDEARKLEAEIMKVV 571 Query: 512 ETRIGKYKWPRRFVYWETMPKSGYGKIVKKQIKALLE 548 + R+G P + +PK+ GK++++ I+A+ E Sbjct: 572 DKRLGPIGRPSHVYFVSALPKTRSGKLLRRSIQAICE 608 >gi|152980721|ref|YP_001352572.1| acetyl-CoA synthetase [Janthinobacterium sp. Marseille] Length = 664 Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 130/541 (24%), Positives = 232/541 (42%), Gaps = 56/541 (10%) Query: 56 DGSDRIICWQEINARVDALAHALTRRGVKKGDKMLVHSRNNQQIFESAWAAFKMGVVWVP 115 DG + ++E+ RV A+ L G++KGD+++++ + + + A ++G Sbjct: 112 DGKVTRVTYKELYERVCKFANGLKELGIQKGDRVIIYMPMSIEGVAAMQACARIGATHSV 171 Query: 116 TNFRITPPEAAYLGQSSGACIMLYD----RG-----FAHYVDAVRA--ASPTLQHVIALA 164 + +GA +L RG VD A T+++V+ Sbjct: 172 VFGGFSAKSLQERIIDAGAVAVLTSDYQVRGGKNLPLKSIVDEALALGGCDTIRNVVVYK 231 Query: 165 EARPDELDYEA----LLAEGDGSPFAEAE---VDHQDPLWFFYTSGTTGHPKAGVLSHGQ 217 E+++ A L + AE E V + PL+ YTSG+TG PK S G Sbjct: 232 RTG-GEMNFVAGRDIWLHDLVDKQKAECEPVPVGAEHPLFILYTSGSTGKPKGVQHSSGG 290 Query: 218 M---AFVVTNHLADLMPGLNHQSRSLVVAPLSHGAGVHALVNTARGAASILLSSERLVVE 274 A + D+ P + + + H + + A GA I+ + Sbjct: 291 YLLWAMLTMKWSFDIKPNDVYWCTADIGWITGHTYVTYGPL--ACGATQIVFEGVPMFPN 348 Query: 275 EA--WQLVEKYRVDNLFTVPTIVKLLVEDASVD------RYDHASLKHVIYAGAPMYRAD 326 W +V+K++V +T PT ++ L++ A D +YD +SL+ + G P+ Sbjct: 349 AGRFWDMVQKHKVTIFYTAPTAIRSLIKAADADPAVHPSKYDLSSLRLLGSVGEPINPEA 408 Query: 327 QVYALKKLGRV---LVQYYGLGEVTGNITFLPPYMHFEDDDHPQARVGTCGIPRTGMQIA 383 ++ K +G + + E G++ P P G+C +P G+ A Sbjct: 409 WMWYYKNIGGERCPIADTFWQTETGGHVISPMP------GATPMVP-GSCTLPLPGIAAA 461 Query: 384 ILDDDGQSLPPRQTGEICVR--GPAVFMGYHNNPEANAKA-FKHDW----FHTGDLGHVD 436 ++D+ G L + G + ++ P++ N+PE K+ F H+ + GD + Sbjct: 462 VVDEVGHDLANGKGGLLVIKRPWPSMIRNIWNDPERFQKSYFPHELGGTIYLAGDGAIRN 521 Query: 437 EE-GFLYITGRSSDMYISGGSNVYPREIEEALLTHPAVSEVAVLGVPDPKWGESGLAVIV 495 EE G+ ITGR D+ G + EIE AL+ +P V+E AV+G PD GES A +V Sbjct: 522 EETGYFTITGRIDDVLNISGHRMGTMEIESALVANPIVAEAAVVGKPDETTGESICAFVV 581 Query: 496 CKPGQQVDEQALLAHLETR------IGKYKWPRRFVYWETMPKSGYGKIVKKQIKALLEE 549 K + ++A E R IG P+ + + +PK+ GKI+++ ++ L ++ Sbjct: 582 LKRSRPTGDEAKQIAKELRDWVAKEIGPIAKPKEIRFGDNLPKTRSGKIMRRLLRVLAKD 641 Query: 550 Q 550 + Sbjct: 642 E 642 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,384,539 Number of extensions: 60071 Number of successful extensions: 163 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 3 Length of query: 555 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 467 Effective length of database: 895,685 Effective search space: 418284895 Effective search space used: 418284895 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)