BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3724.p
         (344 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981151|ref|YP_001352159.1| C4-dicarboxylate-binding peripl...   102   3e-23

>gi|152981151|ref|YP_001352159.1| C4-dicarboxylate-binding
           periplasmic protein [Janthinobacterium sp. Marseille]
          Length = 365

 Score =  102 bits (255), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 118/240 (49%), Gaps = 6/240 (2%)

Query: 40  FKYANNLPVTHPMNARAKEMAAAIAEQSKGRIELQLYPNNQLGTDTDMLSQVRAGAIDFF 99
            K+++  P   P    A      +   S+ RI + +YPNN L  ++D L  ++ GA+   
Sbjct: 57  IKFSHVSPADSPKGKAALRFKELVERNSQRRIRVDVYPNNLLYKESDELEALQLGAVQML 116

Query: 100 TLSPLILGTL-VPSAQISGIGFAFKDYSQVWPAMDGELGAHVRKQIESKSTL-FAFEKIW 157
             S   L    +   ++  + FAF D   V    +G +G  + +++ESK  +  A+   W
Sbjct: 117 APSLAKLAQFGLQDFEVFDLPFAFTDKESVARVTEGPIGKTLLRKLESKGMVGLAY---W 173

Query: 158 DNGYRQITNSTRPIKTADDLKGMKLRVPPSPLWTSMFKAFDAAPTSINFAEVYSALQTKI 217
           DNG++ ++ + R ++   D  G+ +R+  S + +   +A  A P  ++  EVY ALQ  +
Sbjct: 174 DNGFKIMSGNKR-LRVPSDFAGLAMRIHSSKVLSWQMEALGAIPLILDAYEVYPALQGGV 232

Query: 218 VEGQENPMAIISTAKLYEVQKYCSITNHMWDGFWFLGNKKSFERLPKDLQELMARIINEA 277
           V+G E         K YEVQ   +I+NH + G   + NKK ++ LP DL+  +   + EA
Sbjct: 233 VDGAETSPVNFYARKWYEVQSNVTISNHGYLGSAVVVNKKFWDGLPSDLRNTIDLAMREA 292


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.131    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 697,424
Number of extensions: 25731
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 260
Effective length of database: 910,473
Effective search space: 236722980
Effective search space used: 236722980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)