BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3723.p
         (627 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980992|ref|YP_001352826.1| TRAP-type mannitol/chloroaromat...    83   6e-17

>gi|152980992|ref|YP_001352826.1| TRAP-type mannitol/chloroaromatic
           compound transport system, large permease component
           [Janthinobacterium sp. Marseille]
          Length = 563

 Score = 82.8 bits (203), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 120/494 (24%), Positives = 206/494 (41%), Gaps = 89/494 (18%)

Query: 215 VCVAAGIPIAFAFGTATMAY------LALATTAPLMIVVSRMDEGMSSLILLSVPLFVLL 268
           V + +G P+AF+     + +      L L     L  + +R+   M++  LL++P F  +
Sbjct: 19  VFLLSGFPVAFSLAANGLFFGLMGIELGLLKPELLQALPNRIFGIMANDTLLAIPFFTFM 78

Query: 269 GSLLEQSGLAKTLIDFMAALLGHVRGGLQYVLLGAMFLVSGISGSKAADMAAIAPALFPE 328
           G +LE+SG+A+ L+D +  L G +RGG+ Y ++    L++  +G  AA + ++     P 
Sbjct: 79  GLILERSGMAEDLLDTIGQLFGPLRGGVAYAVIFVGALLAATTGVVAASVISMGLISLPV 138

Query: 329 MKKRGSQPEELVALLSSSGAMTETIPPSLVLITIGAVCSVSI----TALFIGGLMPAAIA 384
           M + G   +    ++++SG + + IPPSLVLI +      S+     A F  GLM  A+ 
Sbjct: 139 MLRYGYDKKIASGVIAASGTLAQIIPPSLVLIVMADQLGRSVGDMYQAAFGPGLMLTAMY 198

Query: 385 TLAIAVVCWRR----------ARREPMPAVKRAPVSLIL-------------KTLIAAIP 421
              I ++   R          AR    P  K   VSL L             + L++  P
Sbjct: 199 AGYILIISIMRPKWVPALPLEARNLREPNGKSGVVSLFLLIIATVAVCFVFEELLLSLNP 258

Query: 422 ALALPMLIRVAVIEGVATATEVATIG----------------------------VAYTVV 453
            L        A   G+A A  VA I                             V  T+ 
Sbjct: 259 KLHADEGAIYAATLGIAGAFLVAVINRRMKLGFLSKMAEKVVFVLIPPLALIFLVLGTIF 318

Query: 454 VG---------------LVMHLFMRHLDFKRLYPMLIEAAALSGAILLIIGMATAMAWAL 498
           VG               LV+ +  R L +  L   +   + LS  ++ I  +  +  + L
Sbjct: 319 VGIATPTEGGGMGAFGALVLAIMNRRLSWDLLKQAMNSTSRLSCFVMFI--LIGSSVFGL 376

Query: 499 TQSGFSAKL--VAIMQGVPGGAAGFLLITIVIFIVLGSLLEGIPAIVLFGPLLFPVARSL 556
              G +  L    ++  +PGG AGFL++  ++F  L   L+      +  PL+ PVA  +
Sbjct: 377 IFRGVNGDLWVEHLLTSLPGGTAGFLIVVNILFFGLAFFLDFFELAFILVPLVGPVAEKM 436

Query: 557 GVHDVHYAMVVILAMGIGLFAPPFGVGFYAACAIGKVSPDGVFNR--VWGY----LAALV 610
           G+  + + +++ + M      PPFG   +A   +  V+P  V      WG     L  ++
Sbjct: 437 GIDLIWFGVLLSVNMQTSFMHPPFG---FALFYLRSVAPKEVKTSDIYWGSVPFVLIQVI 493

Query: 611 VALLVVAFVPWISI 624
           +  L++AF   IS+
Sbjct: 494 MVTLIIAFPKLISV 507


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.141    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,086,241
Number of extensions: 37670
Number of successful extensions: 253
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 3
Length of query: 627
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 538
Effective length of database: 891,988
Effective search space: 479889544
Effective search space used: 479889544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)