BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3722.p (256 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reduc... 150 6e-38 gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Jant... 149 2e-37 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 145 2e-36 gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Jant... 135 3e-33 gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Jant... 131 4e-32 >gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 249 Score = 150 bits (380), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 104/251 (41%), Positives = 141/251 (56%), Gaps = 6/251 (2%) Query: 2 NQHDSGARVALVTGGAMGIGASISQQLAARGHTVLVADIN-LEAAASTAQALVAAGHRAA 60 N + +VA V GG+ GIGA+I ++LA G V ++ + A + AQ + AAG RA Sbjct: 3 NTNQLTGKVAFVQGGSRGIGAAIVKRLARDGAAVAFTYVSSADKAKAVAQEIEAAGGRAL 62 Query: 61 PVQMDLGSADSIASAFADIEKDHGRCDVLVNNAGVARTYCFLDYPLENWLLTMNVNVTGV 120 + D A ++ A K GR D+LVNNAGV D+ LE++ T+ VNV V Sbjct: 63 AIHADSSDASAVQQAIQAAAKAFGRIDILVNNAGVLALAPVEDFKLEDFDRTVAVNVRSV 122 Query: 121 MLAGQHAARLMVKQRWGRIVNISSISGLR-AGAGRTAYGTSKAAVIALTRQMAIELAQHG 179 +A Q AAR M GRI+ I S + R AG Y SKAA++ LT+ +A +L G Sbjct: 123 FVATQEAARHM--GEGGRIITIGSTNADRMPFAGGAVYAMSKAAIVGLTKGLARDLGPRG 180 Query: 180 ITVNSVAPGPVETQMTQAMHSEQTRESYYRLVPMHRYGTTDEIASAVCYLAADESSYITG 239 ITVN+V PGPV+T M A + ++ L+ + RYG +EIAS V YLA E+ YITG Sbjct: 181 ITVNNVQPGPVDTDMNPA--NSDFADTLKGLMAIGRYGKDEEIASFVAYLAGPEAGYITG 238 Query: 240 HVLPVDGGFMA 250 L +DGGF A Sbjct: 239 ASLTIDGGFGA 249 >gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Janthinobacterium sp. Marseille] Length = 246 Score = 149 bits (376), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 84/240 (35%), Positives = 133/240 (55%), Gaps = 1/240 (0%) Query: 9 RVALVTGGAMGIGASISQQLAARGHTVLVA-DINLEAAASTAQALVAAGHRAAPVQMDLG 67 R+ALVTGG G+G +I +LAA G+ V+ + A + + +G+ D+ Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPGNKKADEWLKLMKESGYDFHAYPCDVS 62 Query: 68 SADSIASAFADIEKDHGRCDVLVNNAGVARTYCFLDYPLENWLLTMNVNVTGVMLAGQHA 127 DS A IEK+ G DVLVNNAG+ R F +W M N+ V + Sbjct: 63 DYDSAQQCVAQIEKEMGPVDVLVNNAGITRDITFKKMGKPDWDAVMATNLDSVFNMTKPV 122 Query: 128 ARLMVKQRWGRIVNISSISGLRAGAGRTAYGTSKAAVIALTRQMAIELAQHGITVNSVAP 187 MV++ WGRI+NISS++G + G+T Y +KA + T+ +A+E+A+ +TVN+++P Sbjct: 123 CDGMVERGWGRIINISSVNGQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTISP 182 Query: 188 GPVETQMTQAMHSEQTRESYYRLVPMHRYGTTDEIASAVCYLAADESSYITGHVLPVDGG 247 G + T+M A+ + +PM R G +EIA V YLA+DE++++TG + ++GG Sbjct: 183 GYIGTKMVMAIPQDVLDTKIVPQIPMGRLGKPEEIAGLVAYLASDEAAFLTGANIAINGG 242 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 145 bits (367), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/248 (35%), Positives = 140/248 (56%), Gaps = 4/248 (1%) Query: 1 MNQHDSGARVALVTGGAMGIGASISQQLAARGHTVLVADINLEAAASTAQALVAAGHRAA 60 M D +VALVTG + GIG +I+Q+LA G V+ + AA+ ++ L G+ Sbjct: 1 MTTVDLSGQVALVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEYL---GNGGK 57 Query: 61 PVQMDLGSADSIASAFADIEKDHGRCDVLVNNAGVARTYCFLDYPLENWLLTMNVNVTGV 120 V +D+ A + +I+K+ G +LVNNAG+ + + E W + N+T V Sbjct: 58 GVVLDVNDAARSVALIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAV 117 Query: 121 MLAGQHAARLMVKQRWGRIVNISSISGLRAGAGRTAYGTSKAAVIALTRQMAIELAQHGI 180 + R M+K + GRI+NI+S+ G AG+ Y +KA V ++R +A E+ I Sbjct: 118 GRLSRAVLRGMMKAKTGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRNI 177 Query: 181 TVNSVAPGPVETQMTQAMHSEQTRESYYRLVPMHRYGTTDEIASAVCYLAADESSYITGH 240 TVN +APG ++T MT+ + SEQ + + VP+ R G ++IA+AV +LA+ ++SYITG Sbjct: 178 TVNCIAPGFIDTDMTKTL-SEQQIAALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGT 236 Query: 241 VLPVDGGF 248 L V+GG Sbjct: 237 TLHVNGGM 244 >gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 278 Score = 135 bits (340), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 128/242 (52%), Gaps = 3/242 (1%) Query: 12 LVTGGAMGIGASISQQLAARGHTVLVADINLEAAASTAQALVAAGHRAAPVQMDLGSADS 71 L+TG GIG + + A G+ V V+ EA + A L A G+ A + D+ Sbjct: 36 LITGALTGIGRATAFAFAREGYRVAVSGRREEAGNALAAELRALGNEAEFLLADVRFEAD 95 Query: 72 IASAFADIEKDHGRCDVLVNNAGV-ARTYCFLDYPLENWLLTMNVNVTGVMLAGQHAARL 130 + + GR DV VNNAG + ++ N+ T VNV G ML+ +H R+ Sbjct: 96 VRNLVEQTVVRFGRIDVAVNNAGTEGQLAPIVEQSAANYAETFGVNVLGTMLSLKHEMRV 155 Query: 131 MVKQRWGRIVNISSISGLRAGAGRTAYGTSKAAVIALTRQMAIELAQHGITVNSVAPGPV 190 M+ Q G I+N+SS++G AG + Y SK AV LT+ A+E A G+ VN+VAPGPV Sbjct: 156 MLAQGSGSIINLSSVAGKVGIAGASVYVASKHAVEGLTKSAALEGAAAGVRVNAVAPGPV 215 Query: 191 ETQMTQAM--HSEQTRESYYRLVPMHRYGTTDEIASAVCYLAADESSYITGHVLPVDGGF 248 T+M SE+ + + +P R T DEIA + +LA+D+ SY+TG + VDGG Sbjct: 216 ATEMLDRFVGGSEENKAGFLATIPAGRAATPDEIAQTIVFLASDKVSYLTGQSIAVDGGH 275 Query: 249 MA 250 A Sbjct: 276 TA 277 >gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 246 Score = 131 bits (330), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 132/244 (54%), Gaps = 9/244 (3%) Query: 9 RVALVTGGAMGIGASISQQLAARGHTVLVADINLEAAASTAQALVA----AGHRAAPVQM 64 +VA++TG + GIGA+I+++LA G V+ IN ++A+ A ALVA A H A V+ Sbjct: 7 KVAIITGASRGIGAAIAERLAQDGFAVV---INYASSATEADALVAKLQAAQHEAIAVKA 63 Query: 65 DLGSADSIASAFADIEKDHGRCDVLVNNAGVARTYCFLDYPLENWLLTMNVNVTGVMLAG 124 D+ ++ + F + E+ G+ DVL+NNAG+ + + E + T ++NV G Sbjct: 64 DVANSADVRRLFDETEQKLGKVDVLINNAGILQMASLAETSDELFERTFSINVRGTFNTL 123 Query: 125 QHAARLMVKQRWGRIVNISSISGLRAGAGRTAYGTSKAAVIALTRQMAIELAQHGITVNS 184 + AA + GR+VN SS + + + Y SKAAV LT A E+ ITVN+ Sbjct: 124 REAATRL--NDGGRVVNFSSTTVAMSLPNYSVYTGSKAAVEVLTPIFAKEMRGRNITVNA 181 Query: 185 VAPGPVETQMTQAMHSEQTRESYYRLVPMHRYGTTDEIASAVCYLAADESSYITGHVLPV 244 VAPGPV T + +E + + P+ R G D+IA+AV +L + +I G VL Sbjct: 182 VAPGPVATDLFFNGKTEAQIQQLANMPPLQRLGQPDDIAAAVSFLVGRDGGWINGQVLRA 241 Query: 245 DGGF 248 +GG Sbjct: 242 NGGL 245 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.130 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 536,006 Number of extensions: 18395 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 108 Number of HSP's successfully gapped: 23 Length of query: 256 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 175 Effective length of database: 921,564 Effective search space: 161273700 Effective search space used: 161273700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)