BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3721.p (266 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Jant... 113 1e-26 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 97 1e-21 gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase... 96 2e-21 gi|152981549|ref|YP_001352605.1| glucose-1-dehydrogenase, (3-oxo... 95 3e-21 gi|152982667|ref|YP_001354167.1| glucose-1-dehydrogenase, (3-oxo... 93 2e-20 >gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 278 Score = 113 bits (283), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/256 (34%), Positives = 125/256 (48%), Gaps = 12/256 (4%) Query: 5 MQDRAIIVTGAGSVGEGWGNGKAAAVLYARQGGRVLAVDRSIQAALETQDIIRREGGICE 64 M +++TGA + G G+A A +AR+G RV R +A +R G E Sbjct: 30 MNTPTVLITGALT-----GIGRATAFAFAREGYRVAVSGRREEAGNALAAELRALGNEAE 84 Query: 65 VLAVDVSRSDEVKAMAEAAMDYFGRVDVLHNNVGI-AELGGAVETSEEDWNRLVAVNQTS 123 L DV +V+ + E + FGR+DV NN G +L VE S ++ VN Sbjct: 85 FLLADVRFEADVRNLVEQTVVRFGRIDVAVNNAGTEGQLAPIVEQSAANYAETFGVNVLG 144 Query: 124 LFLTHKHVLPIMERQRKGAIVNISSVAALRWIGFPYLGYSATKAAILAFTKNVAMQYAAM 183 L+ KH + +M Q G+I+N+SSVA I + Y A+K A+ TK+ A++ AA Sbjct: 145 TMLSLKHEMRVMLAQGSGSIINLSSVAGKVGIAGASV-YVASKHAVEGLTKSAALEGAAA 203 Query: 184 GIRANCVLPGMMNTPMIREPLKAAYGGDIEQMCAQRDAQCPMGFMGDAWDVAHASLFLAS 243 G+R N V PG P+ E L GG E+ A A P G ++A +FLAS Sbjct: 204 GVRVNAVAPG----PVATEMLDRFVGGS-EENKAGFLATIPAGRAATPDEIAQTIVFLAS 258 Query: 244 DHARYITGLDMIVDGG 259 D Y+TG + VDGG Sbjct: 259 DKVSYLTGQSIAVDGG 274 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 97.1 bits (240), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 117/242 (48%), Gaps = 12/242 (4%) Query: 19 GEGWGNGKAAAVLYARQGGRVLAVDRSIQAALETQDIIRREGGICEVLAVDVSRSDEVKA 78 G G G+A A A+ G +V+ S A + + GG VL DV+ + A Sbjct: 15 GASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEYLG-NGGKGVVL--DVNDAARSVA 71 Query: 79 MAEAAMDYFGRVDVLHNNVGIAELGGAVETSEEDWNRLVAVNQTSLFLTHKHVLPIMERQ 138 + + FG V +L NN GI + A+ +E+W+ ++A N T++ + VL M + Sbjct: 72 LIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLSRAVLRGMMKA 131 Query: 139 RKGAIVNISSVAALRWIGFPYLGYSATKAAILAFTKNVAMQYAAMGIRANCVLPGMMNTP 198 + G I+NI+SV + Y+A KA + ++ +A + + I NC+ PG ++T Sbjct: 132 KTGRIINITSVVGSSG-NAGQMNYAAAKAGVAGMSRALAREIGSRNITVNCIAPGFIDTD 190 Query: 199 MIREPLKAAYGGDIEQMCAQRDAQCPMGFMGDAWDVAHASLFLASDHARYITGLDMIVDG 258 M + EQ A Q P+G +G D+A A FLAS A YITG + V+G Sbjct: 191 MTKTLS--------EQQIAALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTLHVNG 242 Query: 259 GL 260 G+ Sbjct: 243 GM 244 >gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase [Janthinobacterium sp. Marseille] Length = 264 Score = 96.3 bits (238), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 135/270 (50%), Gaps = 26/270 (9%) Query: 5 MQDRAIIVTGAGSVGEGWGNGKAAAVLYARQGGRVLAVD-------RSIQAALETQDIIR 57 + + +VTG+ S G G G A A+ A+QG ++ +++QAAL +R Sbjct: 6 LHGKTALVTGSTS---GIGLGIAQAL--AQQGADIVLNGFGDANEIKTLQAAL-----MR 55 Query: 58 REGGICEVLAVDVSRSDEVKAMAEAAMDYFGRVDVLHNNVGIAELGGAVETSEEDWNRLV 117 G C D+S+ E++AM A FGRVD+L NN GI + E W+ ++ Sbjct: 56 NYGVKCVHHPADMSKPAEIEAMMAFAAQQFGRVDILVNNAGIQHTETIEDFPVEKWDAII 115 Query: 118 AVNQTSLFLTHKHVLPIMERQRKGAIVNISSVAALRWIG-FPYLGYSATKAAILAFTKNV 176 A+N +S F T + LP+M+ + G I+NI+SV L +G Y A K I+ TK Sbjct: 116 AINLSSAFHTTRLALPMMQAKNWGRIINIASVHGL--VGSVQKSAYVAAKHGIVGLTKVT 173 Query: 177 AMQYAAMGIRANCVLPGMMNTPMIREPL--KAAYGGDIEQMCAQRD---AQCPMGFMGDA 231 A++ A GI N + PG + TP++++ + +AA G + A++D + P G Sbjct: 174 ALEMAHTGITCNAICPGWVLTPLVQKQVDARAAREG-LSDEAAKKDLVSEKQPSGEFVTP 232 Query: 232 WDVAHASLFLASDHARYITGLDMIVDGGLS 261 + ++FL S+ A + G +DGG + Sbjct: 233 QQLGALAVFLCSEAAVQVRGAAWNMDGGWT 262 >gi|152981549|ref|YP_001352605.1| glucose-1-dehydrogenase, (3-oxoacyl-(acyl carrier protein) reductase) [Janthinobacterium sp. Marseille] Length = 254 Score = 95.1 bits (235), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 104/206 (50%), Gaps = 4/206 (1%) Query: 57 RREGGICEVLAVDVSRSDEVKAMAEAAMDYFGRVDVLHNNVGIAELGGAVETSEEDWNRL 116 R GG +A D++ KA+ AA D FG VD+L NN G+ + +E E++++ Sbjct: 48 REIGGKVLYVAGDIALPSTAKALVAAATDAFGGVDILINNAGVFKPKAFLEVDEQEYSWF 107 Query: 117 VAVNQTSLFLTHKHVLPIMERQRKGAIVNISSVAALRWIG-FPYLGYSATKAAILAFTKN 175 + F + M+ + GAIV S+ A++ IG P YSA A + A T+N Sbjct: 108 LDTILKGKFFMAQAAAKAMQLRGGGAIVQTGSLWAIQAIGATPSAAYSAANAGVHALTRN 167 Query: 176 VAMQYAAMGIRANCVLPGMMNTPMIREPLKAAYGGDIEQMCAQRDAQCPMGFMGDAWDVA 235 +A++ A IR N V P ++ TP+ + ++ +A P+G G DVA Sbjct: 168 LAIELAPFNIRINTVAPAVVETPVYNTFMT---DDQVKDTLPSFNAFHPLGRNGQPADVA 224 Query: 236 HASLFLASDHARYITGLDMIVDGGLS 261 A LFLAS A +ITG + VDGG++ Sbjct: 225 EAMLFLASSSASWITGTVLPVDGGVT 250 >gi|152982667|ref|YP_001354167.1| glucose-1-dehydrogenase, (3-oxoacyl-(acyl carrier protein) reductase) [Janthinobacterium sp. Marseille] Length = 258 Score = 92.8 bits (229), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/257 (31%), Positives = 117/257 (45%), Gaps = 9/257 (3%) Query: 5 MQDRAIIVTGAGSVGEGWGNGKAAAVLYARQGGRVLAVDRSIQAALETQDIIRREGGICE 64 + IVTG GS G GK A + G V+ R I G Sbjct: 4 FSSKVAIVTGGGS-----GIGKEVAARLVKAGANVVIGGRDAAKLQRVATEIDPSGDHVR 58 Query: 65 VLAVDVSRSDEVKAMAEAAMDYFGRVDVLHNNVGIAELGGAVETSEEDWNRLVAVNQTSL 124 A D+++ A+ + A FG VD+L NN G+ +E E +++ + Sbjct: 59 FHAGDIAQPATATALVDLAKQAFGGVDILINNAGVFRPKAFLEVEEAEYDWFLDTILKGK 118 Query: 125 FLTHKHVLPIMERQRKGAIVNISSVAALRWIG-FPYLGYSATKAAILAFTKNVAMQYAAM 183 F + M+ + GAIV S+ AL+ IG P YSA A + A T+N+A++ AA Sbjct: 119 FFMAQAAAKAMKLRGGGAIVQTGSLWALQAIGATPSAAYSAANAGVHALTRNLAIELAAS 178 Query: 184 GIRANCVLPGMMNTPMIREPLKAAYGGDIEQMCAQRDAQCPMGFMGDAWDVAHASLFLAS 243 IR N V PG++ TP+ + ++ +A P+G G DVA A LFLAS Sbjct: 179 NIRINTVAPGVVETPVYNTFMT---DDQVKATLPAFNAFHPLGRNGQPADVAEAILFLAS 235 Query: 244 DHARYITGLDMIVDGGL 260 +A +ITG + VDGG+ Sbjct: 236 ANASWITGTVLSVDGGV 252 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 627,174 Number of extensions: 24916 Number of successful extensions: 114 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 79 Number of HSP's successfully gapped: 21 Length of query: 266 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 184 Effective length of database: 917,867 Effective search space: 168887528 Effective search space used: 168887528 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)