BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3720.p (300 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 174 7e-45 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 150 9e-38 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 96 4e-21 gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 78 6e-16 gi|152982762|ref|YP_001353011.1| transcriptional activator MetR ... 76 3e-15 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 174 bits (441), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 101/290 (34%), Positives = 160/290 (55%), Gaps = 5/290 (1%) Query: 2 IELRHLLYFRTVAETLHFGRAAALLHISQPPLTRQIAALEKELDAQLFDRSKRAIQLTAA 61 IELR L +F TVAE +HFGRAA LH++QPPL++ I ALE L QLF R+ R++ LT A Sbjct: 3 IELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTPA 62 Query: 62 GKHFYRDSTEIFKALERAKRNVASSSSGTLGALKVGFMMSSAYNILPAVTRHYSAAYPDV 121 G ++ I + + ++SG G L + F+ ++ Y++LP R + AYP V Sbjct: 63 GIALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYPQV 122 Query: 122 DLRMSEYLPNLLATDLEDEKVDVGIMYRPEDCR---RLDSHTIYAEPLLAVLPRAHR-LA 177 ++ + E ++ +L ++DVG++ P + +LD + +EPL+ +P+ + + Sbjct: 123 EIDLREATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAVPKGLKAVR 182 Query: 178 GKPAISAAELAEDAFISIPRAIAPVVFDLILQHCQLHGFRPRIVLETNLQQTIVNLVGEG 237 GK ++ +AE I PR IAP D IL + G P I E QTI+ LV G Sbjct: 183 GKQTVALQAVAELPLIIFPRRIAPAFHDAILACYRDAGLTPHIGQEAIQMQTIIGLVSAG 242 Query: 238 LGVALVPTSMQAMHLESTVFKPLIG-APMVEVAVVWNKDNSNPCIGTFVQ 286 +G+ALVP S+ + +K L P+VE + W +DN++P + F++ Sbjct: 243 MGIALVPQSVSNLKRPGVDYKALADKTPLVETGMAWRRDNTSPVLNAFLE 292 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 150 bits (379), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 98/266 (36%), Positives = 140/266 (52%), Gaps = 3/266 (1%) Query: 2 IELRHLLYFRTVAETLHFGRAAALLHISQPPLTRQIAALEKELDAQLFDRSKRAIQLTAA 61 I+LR L YF VAE H +AA + I QPPL++QI ALEKEL LF R R ++LT + Sbjct: 4 IDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTES 63 Query: 62 GKHFYRDSTEIFKALERAKRNVASSSSGTLGALKVGFMMSSAYN-ILPAVTRHYSAAYPD 120 G+ D+ I + + V S G G L VGF S+A + +PAV R + P Sbjct: 64 GQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQKSPG 123 Query: 121 VDLRMSEYLPNLLATDLEDEKVDVGIMYRP-EDCRRLDSHTIYAEPLLAVLPRAHRLAG- 178 V + + E N L DL ++DV + P L T+ E ++ LP HRLA Sbjct: 124 VIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPITHRLAQR 183 Query: 179 KPAISAAELAEDAFISIPRAIAPVVFDLILQHCQLHGFRPRIVLETNLQQTIVNLVGEGL 238 + ++ LAED FI R P ++D ++ C+ GF PR+V E + ++LV GL Sbjct: 184 RKSLPLTALAEDDFILNRRPSGPGLYDSVIAACRAAGFSPRVVQEAKKNLSTLSLVAAGL 243 Query: 239 GVALVPTSMQAMHLESTVFKPLIGAP 264 GV++VP SM+ + L+ V+ L AP Sbjct: 244 GVSIVPASMRHVQLKEVVYLKLEQAP 269 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 95.5 bits (236), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 117/265 (44%), Gaps = 18/265 (6%) Query: 2 IELRHLLYFRTVAETLHFGRAAALLHISQPPLTRQIAALEKELDAQLFDRSKRAIQLTAA 61 +ELRHL YF A++ F RA+ LHI+QP L+ QI +E EL QLFDR R ++LT A Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 62 GKHFYRDSTEIFKALERAKRNVASSSSGTLGALKVGFMMSSAYNILPAVTRHYSAAYPDV 121 G+ F + ++ + + G + G + S LP + ++ YP + Sbjct: 61 GELFQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGI 120 Query: 122 DLRMSEYLPNLLATDLEDEKVDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRAHRLAGKPA 181 + + + L D + G+ Y P +++ ++ PL V+ H L G Sbjct: 121 KITVLRLRSGEIEERLLDGDLHFGVAYAPSSTEQINVEPLFTVPLALVVGDHHPLVGSAG 180 Query: 182 ISAAELAEDAFISIPRAI-APVVFDLILQHCQLHGFRPRIVLETNLQQTIV--------- 231 I+ EL E + + + + D IL +G PRIV+E N + I+ Sbjct: 181 ITLNELNEHELVMLSDEYNSRKMMDAIL---LANGITPRIVMEMNAIEPILATVRHSSLA 237 Query: 232 -----NLVGEGLGVALVPTSMQAMH 251 NLV E G+ VP + H Sbjct: 238 TILSANLVDEMPGLHQVPLTPTVTH 262 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 78.2 bits (191), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 66/284 (23%), Positives = 118/284 (41%), Gaps = 12/284 (4%) Query: 1 MIELRHLLYFRTVAETLHFGRAAALLHISQPPLTRQIAALEKELDAQLFDRSKRAIQLTA 60 ++ L L Y VA HFG AA ++QP L+ I LE EL LF+R I +T Sbjct: 16 IMTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEISMTP 75 Query: 61 AGKHFYRDSTEIFKALERAKRNVASSSSGTLGALKVGFMMSSAYNILPAVTRHYSAAYPD 120 G + + + K + +G ++G + + A +LP + + P Sbjct: 76 LGAQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKTIIERVPQ 135 Query: 121 VDLRMSEYLPNLLATDLEDEKVDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRAHRLAGKP 180 + L + E L L ++D I+ P + L +Y EP + +P+ H+ A + Sbjct: 136 MPLVLQENFTVKLLELLRQGELDAAIVALPFPDQGLLVQPVYDEPFVVAVPKHHKWANRD 195 Query: 181 AISAAELAEDAFISIPRAIAPVVFDLILQHC------QLHGFRPRIVLETNLQQTIVNLV 234 ++S +L + + + D +L+ C G E + +TI ++V Sbjct: 196 SVSTDDLKSETMLLL--GNGHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRHMV 253 Query: 235 GEGLGVALVP-TSMQAMHLESTVFK--PLIG-APMVEVAVVWNK 274 G+G+ ++P S+ M + + + P P V +VW K Sbjct: 254 ASGIGITVLPQASIPDMQAKDGMLRYIPFTQPGPSRRVVLVWRK 297 >gi|152982762|ref|YP_001353011.1| transcriptional activator MetR [Janthinobacterium sp. Marseille] Length = 306 Score = 75.9 bits (185), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 113/244 (46%), Gaps = 3/244 (1%) Query: 1 MIELRHLLYFRTVAETLHFGRAAALLHISQPPLTRQIAALEKELDAQLFDRSKRAIQLTA 60 ++ELRHL + E + RAAALL+++Q L+ QI LE LF+R ++ T Sbjct: 4 ILELRHLKTLLALREAGNLLRAAALLNVTQSALSHQIKQLEDHHGTPLFERKSTPVRFTP 63 Query: 61 AGKHFYRDSTEIFKALERAKRNVASSSSGTLGALKVGFMMSSAYNILPAVTRHYSAAYPD 120 AG+ + + + + +R++ + G G L++ + ++ L + +P+ Sbjct: 64 AGERLLKLADTVLPQVAETERDLVRLAQGVAGQLRIAVECHTCFDWLMPAMDVFRGRWPE 123 Query: 121 VDLRMSEYLPNLLATDLEDEKVDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRAHRLAGKP 180 V+L + L + + DV I+ + ++D H ++ ++A++ H LA K Sbjct: 124 VELDIVSGFQADPVGLLYEHRADVAIVAEIDPDEKVDYHALFRFEIVALVAHDHPLADKE 183 Query: 181 AISAAELAEDAFISIPRAIAPVVFDLILQHCQLHGFRPRIVLETNLQQTIVNLVGEGLGV 240 ++A + D I+ P + + D++ Q + G + T L ++ LV G+ Sbjct: 184 FLTAEDFIGDTLITYP--VPDDMLDVVRQVLKPAGVQV-ARRTTELTVAMLQLVASRRGI 240 Query: 241 ALVP 244 A +P Sbjct: 241 ATLP 244 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 673,978 Number of extensions: 27685 Number of successful extensions: 131 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 119 Number of HSP's successfully gapped: 20 Length of query: 300 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 217 Effective length of database: 914,170 Effective search space: 198374890 Effective search space used: 198374890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)