BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3719.p (411 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979868|ref|YP_001354671.1| two-components system response ... 208 6e-55 gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(... 201 7e-53 gi|152982343|ref|YP_001355176.1| propionate catabolism operon re... 186 2e-48 gi|152981133|ref|YP_001355363.1| sigma-54 dependent response reg... 183 2e-47 gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptio... 182 4e-47 >gi|152979868|ref|YP_001354671.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 471 Score = 208 bits (529), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 133/332 (40%), Positives = 190/332 (57%), Gaps = 16/332 (4%) Query: 73 QLAGGDALMQALVERGKRLIERGIPVLILGQTGTGKEYLSRALHDYSARRQAGWIAVNCA 132 +L G M AL + RL PV I G++G+GKE +R +H SAR ++AVNC Sbjct: 139 RLMGQSEAMLALRAQIARLARSMAPVAISGESGSGKELAARDIHAQSARSDKPFVAVNCG 198 Query: 133 SIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLS 192 +IPE+L E+E FGY KGAF+GA+ G Q A+GGTL LDE+ D+PLA+Q +LLR + Sbjct: 199 AIPEALMEAEFFGYRKGAFTGAV-DDRDGFFQAANGGTLLLDEVADLPLAMQVKLLRAIQ 257 Query: 193 EREVTPLGALRPVPVDVQLICATHQDLPNLIAQGRFREDLYYRIAGGVLRLPALRERADL 252 ER V +GA PVDV++I ATHQ+L + + +G FR+DLYYR+ L LP LRER D Sbjct: 258 ERRVRKVGATTEEPVDVRIISATHQNLHDCVGRGTFRQDLYYRLNVIELNLPPLRERLDD 317 Query: 253 GRLVLQMMADELGVQADEQLIAPAAWQRLLAYPWPGNLRQMHAVIRYSCAVMNGTRIEVS 312 L+ + + L A + + PAA + LL Y +PGN+R++ ++ + A N IEVS Sbjct: 318 IALLAKAILTRL--DAGQARLTPAALEALLQYSFPGNVRELENILERALAFANDGVIEVS 375 Query: 313 DLPEELMQSQGPVLAQ-VHPLA-PRMAERPPSAVVTG------GPWPD-----ERTRVIA 359 DL + + V A+ V LA P A P A G PD ER + Sbjct: 376 DLVLKAAHTPKAVAAEMVEALAVPEQAMVAPDAKPLAATSDLPGSLPDHLDDVEREIIRR 435 Query: 360 ALNGSRWNISAASRQLGMCRASLYRKLRQLDI 391 AL+ +++N + A+ LG+ L ++++LDI Sbjct: 436 ALSKTQFNRTQAAELLGISFRQLRYRMQRLDI 467 >gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(I) [Janthinobacterium sp. Marseille] Length = 506 Score = 201 bits (511), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 110/246 (44%), Positives = 159/246 (64%), Gaps = 7/246 (2%) Query: 81 MQALVERGKRLIERGIPVLILGQTGTGKEYLSRALHDYSARRQAGWIAVNCASIPESLAE 140 MQ + RL + + VLI G++G+GKE ++RALH +S R +IA+N A+IP+ L E Sbjct: 143 MQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKHSPRASQPFIALNTAAIPKDLLE 202 Query: 141 SELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSEREVTPLG 200 SELFG+ +GAF+GA +G+ +QA+ GTLFLDEIGDMP LQTRLLRVLS+ +G Sbjct: 203 SELFGHERGAFTGA-QATRRGRFEQAENGTLFLDEIGDMPFDLQTRLLRVLSDGHFYRVG 261 Query: 201 ALRPVPVDVQLICATHQDLPNLIAQGRFREDLYYRIAGGVLRLPALRERAD----LGRLV 256 +P+ +V++I ATHQ+L + + +G FREDLY+R+ LRLP+LRER + L R Sbjct: 262 GHQPLKANVRVIAATHQNLEHRVREGLFREDLYHRLNVIRLRLPSLRERREDIPILTRHF 321 Query: 257 LQMMADELGVQADEQLIAPAAWQRLLAYPWPGNLRQMHAVIRYSCAVMNGTRIEVSDLPE 316 LQ A +LGV+ + ++ +A Q L + PGN+RQ+ + + + G +E DLP Sbjct: 322 LQQSAKQLGVEV--KRMSDSAMQFLSSLELPGNVRQLENLCNWITVMAPGQTVEAKDLPH 379 Query: 317 ELMQSQ 322 EL + Q Sbjct: 380 ELTEGQ 385 >gi|152982343|ref|YP_001355176.1| propionate catabolism operon regulatory protein [Janthinobacterium sp. Marseille] Length = 543 Score = 186 bits (473), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 129/329 (39%), Positives = 184/329 (55%), Gaps = 24/329 (7%) Query: 71 IDQLAGGDALMQALVERGKRLIERGIPVLILGQTGTGKEYLSRALHD----YSARRQAG- 125 I L G A M+++ + + VLI G+TGTGKE +++A+H + QAG Sbjct: 221 IKDLRGESAAMESVRQSITLFAKSAATVLIQGETGTGKELVAQAMHRAHPLMQGKTQAGH 280 Query: 126 -WIAVNCASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQ 184 ++AVNC ++ ESL ESELFGY +GAF+G+ GG G + A GTLFLDEIG+MPL+LQ Sbjct: 281 PFVAVNCGALAESLLESELFGYEEGAFTGSRRGGRAGLFEAAHRGTLFLDEIGEMPLSLQ 340 Query: 185 TRLLRVLSEREVTPLGALRPVPVDVQLICATHQDLPNLIAQGRFREDLYYRIAGGVLRLP 244 TRLLRVL EREV +G RP+PV V++I ATH DL + +GRFR DL+YR++ L LP Sbjct: 341 TRLLRVLEEREVVRVGGTRPIPVSVRIISATHCDLDARVREGRFRADLFYRLSVLRLSLP 400 Query: 245 ALRER----ADLGRLVLQMMADELGVQ--ADEQLIAPAAWQRLLAYPWPGNLRQMHAVIR 298 LRER A L L+ L V+ A+ Q LLAY WPGN+R++ ++ Sbjct: 401 PLRERQEDVAALAEWYLKNALASLDVRPPANLQAELLTCLPLLLAYRWPGNVRELRNLME 460 Query: 299 YSCAVMNGTRIEVSDLPEELMQSQGPVLAQVHPLAPRMAERPPSAVVTGGPWPDERTRVI 358 + + L ++S P L+ V ++ PP T +V+ Sbjct: 461 RLALFLAAA--PLQALTPAFLKSIAPELSGVIARDAAVSHEPPVEAET-------LQQVL 511 Query: 359 AALNGSRWNISAASRQLGMCRASLYRKLR 387 +G+R AA+ LG+ R +L+R+L+ Sbjct: 512 LRHHGNR---EAAANYLGISRTTLWRRLQ 537 >gi|152981133|ref|YP_001355363.1| sigma-54 dependent response regulator [Janthinobacterium sp. Marseille] Length = 481 Score = 183 bits (465), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 114/321 (35%), Positives = 173/321 (53%), Gaps = 34/321 (10%) Query: 71 IDQLAGGDALMQALVERGKRLIERGIPVLILGQTGTGKEYLSRALHDYSARRQAGWIAVN 130 ++ L G A ++ + E KRL VLI G++GTGKE +RA+H S R ++ +N Sbjct: 183 VEGLVGASAALEPIREAIKRLATVPSTVLITGESGTGKEIAARAMHKLSNRSHNHFVPIN 242 Query: 131 CASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRV 190 C ++ + ESELFG+ KGAFSGA +G A GGTLFLDE+ ++PLA+Q +LLRV Sbjct: 243 CGAVAPDIIESELFGHIKGAFSGA-ASSREGLFFYAQGGTLFLDEVAELPLAMQVKLLRV 301 Query: 191 LSEREVTPLGALRPVPVDVQLICATHQDLPNLIAQGRFREDLYYRIAGGVLRLPALRERA 250 L E+ + P+GA R +PVDV++I AT++++ + +GRFR+DLYYR+ L +P LRER Sbjct: 302 LEEKRIRPVGAEREIPVDVRVIAATNRNVEEAVQEGRFRQDLYYRLNVVQLHMPPLRERT 361 Query: 251 D----LGRLVLQMMADELGVQADEQLIAPAAWQRLLAYPWPGNLRQMHAVIRYSCAVMNG 306 + L ++ +A +LGV A + A + L Y WPGN+R++ +I + N Sbjct: 362 EDIPALAEYFVRQLAQQLGVPAKKP--DSALFASLAGYSWPGNVRELRNLIERWLILGN- 418 Query: 307 TRIEVSDLPEELMQSQGPVLAQVHPLAPRMAERPPSAVVTGGPWPD--ERTRVIAALNGS 364 +SD+ A S G + E+ ++ L Sbjct: 419 ----ISDVT--------------------AANNTGSTTTNGDVTLEAVEKQHILKILAEV 454 Query: 365 RWNISAASRQLGMCRASLYRK 385 N + A R+LG+ R +L RK Sbjct: 455 GGNKTEAGRRLGISRKTLERK 475 >gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptional activator [Janthinobacterium sp. Marseille] Length = 550 Score = 182 bits (462), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 98/243 (40%), Positives = 146/243 (60%), Gaps = 1/243 (0%) Query: 81 MQALVERGKRLIERGIPVLILGQTGTGKEYLSRALHDYSARRQAGWIAVNCASIPESLAE 140 MQ + +++ + VLI G++G GKE L+R +H SA ++ +NC +IP L E Sbjct: 255 MQQITALAQKVAKVSATVLISGESGVGKEVLTRLIHKESAHHAGPFVKINCGAIPRDLLE 314 Query: 141 SELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSEREVTPLG 200 SELFGY GAF+GA G G ++ AD GTLFLDEIG++PL LQ +LL+VL +R +T LG Sbjct: 315 SELFGYEAGAFTGAQRQGKVGMIEVADKGTLFLDEIGELPLDLQVKLLQVLQDRTLTRLG 374 Query: 201 ALRPVPVDVQLICATHQDLPNLIAQGRFREDLYYRIAGGVLRLPALRERADLGRLVLQMM 260 RP+ VDV+++ AT++DL ++ +FR DL+YR+ L +P LRER + ++Q Sbjct: 375 GTRPIQVDVRVVAATNRDLQAMVDARQFRSDLFYRLNVVPLHVPPLRERREDILPLIQHY 434 Query: 261 ADELGVQAD-EQLIAPAAWQRLLAYPWPGNLRQMHAVIRYSCAVMNGTRIEVSDLPEELM 319 DEL Q D ++ ++ A LL Y WPGN+R++ ++ + I LP L Sbjct: 435 LDELNAQYDLDKRLSEQALAALLDYDWPGNVRELRNMVERLVVTAPESLIRSDSLPTLLR 494 Query: 320 QSQ 322 S+ Sbjct: 495 SSE 497 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,026,981 Number of extensions: 44742 Number of successful extensions: 162 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 147 Number of HSP's successfully gapped: 7 Length of query: 411 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 325 Effective length of database: 903,079 Effective search space: 293500675 Effective search space used: 293500675 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)