BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3718.p (761 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981029|ref|YP_001354036.1| sensory box/GGDEF family protei... 785 0.0 gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protei... 382 e-107 gi|152981462|ref|YP_001353834.1| signal transduction protein [Ja... 379 e-106 gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protei... 371 e-104 gi|152981134|ref|YP_001352907.1| signal transduction protein [Ja... 367 e-102 >gi|152981029|ref|YP_001354036.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 641 Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/635 (61%), Positives = 490/635 (77%), Gaps = 1/635 (0%) Query: 124 SGEQNQMIIKPPMNRDGYSWRVPLLIPLQDGKGALQGFFAAILDLGYFLKAYQEVSVDGS 183 SG Q+++ P D +WRVP++IP GF AA++DLGYFL+ Y+++ + Sbjct: 5 SGTDIQLVVGRPSISDNSAWRVPIVIPFATADRQ-HGFLAAVIDLGYFLRLYKDIHLGDG 63 Query: 184 SRIEIINAAGLQLAELYGGILSGGSDYAGQEYATFLLTGKGDGLIHALRPGDPVQHVGVQ 243 RIEI+ QLAEL G LS G DYAG +YA FL + +G+I A RPG Q + V Sbjct: 64 GRIEILTRDAYQLAELNGAGLSAGVDYAGSDYAKFLHGQEAEGVIEATRPGAAEQEIAVF 123 Query: 244 RRLAHYPLAVVVSRDQQALLSKLWPAHRVYYLQAILISLLIVVLSGGLISLAHRRRYLYE 303 R L YP VVV+RDQ ++++L HR Y +AI++S+ +V+L GL+ +A+R+R LY Sbjct: 124 RMLGSYPFTVVVTRDQSYVMARLTARHRDYLQRAIIVSVAVVLLMFGLLVIAYRQRRLYN 183 Query: 304 KLVYSEREKSGLIHQLEQEKSRAYQLASHDYLTGIPNRMLFYELAATELSRARRSRNLYA 363 L SE+EK LI QLEQEK RA ASHDYLTGIPNRMLFYELAA EL+RARRSR LY Sbjct: 184 VLAASEQEKRSLIGQLEQEKGRALLQASHDYLTGIPNRMLFYELAAAELARARRSRKLYG 243 Query: 364 LFFLDLDKFKLINDTLGHAVGDALLQEVARRLRAAVREYDLVARLGGDEFVVLVSEIRDE 423 +FFLDLDKFKLINDTLGHAVGD LLQ VARRLR ++REYDL+ARLGGDEFV+L+SE+ E Sbjct: 244 MFFLDLDKFKLINDTLGHAVGDLLLQGVARRLRESLREYDLLARLGGDEFVMLISEMTSE 303 Query: 424 ETVAEIADKLVETLRAPYPDLLGCDVETSPSIGIALYPRDGQSIEALMTNADSAMYTAKS 483 +A++A KLVE +R P+PDL G D+E SPSIGIALYPRDGQ++E L+T+AD+AMY AK+ Sbjct: 304 NDIAKVAAKLVEVVREPFPDLDGHDIEISPSIGIALYPRDGQNVETLLTHADAAMYHAKA 363 Query: 484 AGAGLYRFYDASLNAIAVRGLELLGRFRQAIKDDEFCLHYQPKVELQDYRVVGMEALIRW 543 AGAG YRF+D+SLNA + R +ELL RF++AI+DDEFCLHYQP+VELQ++ +VG+EAL+RW Sbjct: 364 AGAGTYRFFDSSLNASSARDVELLTRFKRAIRDDEFCLHYQPRVELQEFGLVGLEALVRW 423 Query: 544 QHPEHGLIYPGEFIGLAETHDLVQPLGPWIIEAVCRQLAQWRDEGLPLVPVAINVSAKQL 603 QHPEHGLI+P +FI LAE +DL+ LG W+I+A CRQ+A WR GLPLVPVAINVS KQL Sbjct: 424 QHPEHGLIFPNDFITLAEENDLIVLLGRWVIDAACRQIADWRAAGLPLVPVAINVSPKQL 483 Query: 604 NDERLIATVHDALRRYHLSADLLEIEVTESCFISDLEQARQTLEKLRDEGLRIYLDDYGT 663 D L+ TV + L RY + LLEIE+TE CFI D + A + LE+LR GLRI LDDYGT Sbjct: 484 KDSALLETVMETLARYQIEPGLLEIEITEGCFIEDFDTANRVLEQLRANGLRIALDDYGT 543 Query: 664 GYSSLSHIKTLPVYALKIDRSFVRDIRNDNSDGMIVASTVTLARNLGLKVVAEGVETREQ 723 G+S L ++K LP+YA+KIDRSFVRDIRNDNSD +IVAST++LA NLGL+VVAEGVE++EQ Sbjct: 544 GFSGLKNLKKLPIYAIKIDRSFVRDIRNDNSDAVIVASTISLAHNLGLQVVAEGVESKEQ 603 Query: 724 LMHLKLMGCDEVQGFYLQRPVAPAQLVPLLQKGRF 758 L+HLK GCD+VQGFY +RPVA A +V +L++GRF Sbjct: 604 LVHLKTAGCDQVQGFYFKRPVAAAGIVEILRRGRF 638 >gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 382 bits (982), Expect = e-107, Method: Compositional matrix adjust. Identities = 198/473 (41%), Positives = 288/473 (60%), Gaps = 9/473 (1%) Query: 288 SGGLISLAHRRRYLYEK---LVYSEREKSGLIHQLEQEKSRAYQLASHDYLTGIPNRMLF 344 +G +I ++ R +Y L++ E + + E +Q A+HD LTG+PNR L Sbjct: 231 NGEVIWISENARSVYNSDGTLLFFEGTVEAITERKLHEAEIQFQ-ATHDALTGLPNRTLL 289 Query: 345 YELAATELSRARRSRNLYALFFLDLDKFKLINDTLGHAVGDALLQEVARRLRAAVREYDL 404 Y+ + + R L A+ FLDLD+FK IND+LGH VGD LL+ A+RL + +RE D Sbjct: 290 YDRMQQAVLHSERYGKLTAIAFLDLDQFKFINDSLGHQVGDELLKITAQRLTSCLRESDT 349 Query: 405 VARLGGDEFVVLVSEIRDEETVAEIADKLVETLRAPYP--DLLGCDVETSPSIGIALYPR 462 VAR GGDEFV+L+++ +EE + +++ + P+ DL + + + SIG+ L P Sbjct: 350 VARQGGDEFVLLLTDQPNEEAITHTMQRVLHEVSQPWKANDL---EFQITCSIGLTLCPD 406 Query: 463 DGQSIEALMTNADSAMYTAKSAGAGLYRFYDASLNAIAVRGLELLGRFRQAIKDDEFCLH 522 DG+ E L+ NADSAMY AK G ++++ A +N+ LELL R RQAI +++F LH Sbjct: 407 DGRDAETLLKNADSAMYKAKELGRNNFQYFSAEMNSSVTDRLELLNRLRQAITNEDFVLH 466 Query: 523 YQPKVELQDYRVVGMEALIRWQHPEHGLIYPGEFIGLAETHDLVQPLGPWIIEAVCRQLA 582 YQPKV L ++++G EAL+RW G++ P FI LAE L+ PLG W++ CRQ Sbjct: 467 YQPKVSLASHQIIGAEALVRWNSAHSGMVSPASFIPLAEETGLIIPLGEWVLRTACRQNR 526 Query: 583 QWRDEGLPLVPVAINVSAKQLNDERLIATVHDALRRYHLSADLLEIEVTESCFISDLEQA 642 W+D G P +P+++N+S +QL ++ V L L A LE+E+TES +D+E++ Sbjct: 527 AWQDAGYPPIPISVNLSPRQLARGDIVEVVERILTETGLEAQHLELEITESVMTTDVEKS 586 Query: 643 RQTLEKLRDEGLRIYLDDYGTGYSSLSHIKTLPVYALKIDRSFVRDIRNDNSDGMIVAST 702 L +LR G++I LDD+GTGYSSLS++K PV LKID+SFVRDI D IV + Sbjct: 587 FALLTQLRSLGVKISLDDFGTGYSSLSYLKRFPVDTLKIDQSFVRDIATDQDSAAIVKAI 646 Query: 703 VTLARNLGLKVVAEGVETREQLMHLKLMGCDEVQGFYLQRPVAPAQLVPLLQK 755 ++L RNL L V+AEG+ET +Q L GCDE QG+ + +PV V LL + Sbjct: 647 ISLGRNLNLTVLAEGIETEDQFQFLLANGCDEGQGYLMSKPVPNKNFVDLLTQ 699 >gi|152981462|ref|YP_001353834.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 709 Score = 379 bits (972), Expect = e-106, Method: Compositional matrix adjust. Identities = 194/471 (41%), Positives = 296/471 (62%), Gaps = 5/471 (1%) Query: 280 ISLLIVVLSGGLISLAHRRRYLYEKLVYSEREKSGLIHQLEQEKSRAYQLASHDYLTGIP 339 ++++++V + ++++A L +L + + L+ L + A D LT +P Sbjct: 216 LAIVVIVTTLAVLAIALLTSVLDARL---DSQTGKLVRSLALANQELTKQALQDNLTKLP 272 Query: 340 NRMLFYELAATELSRARRSRNLYALFFLDLDKFKLINDTLGHAVGDALLQEVARRLRAAV 399 NR L + + +A R ++ +AL F+DLD FK IND+LGH +GD LL +VA+R+R + Sbjct: 273 NRTLLEDRLDQMVHKAVREQSRFALMFIDLDGFKAINDSLGHHIGDLLLIDVAKRIRDNI 332 Query: 400 REYDLVARLGGDEFVVLVSEIRDEETVAEIADKLVETLRAPYPDLLGCDVETSPSIGIAL 459 R D ARLGGDEFV+L+ E+ + E A +ADKL TL P+ D+ ++ S SIGIA+ Sbjct: 333 RAQDTAARLGGDEFVMLI-EVNEPEDAASVADKLCTTLNQPF-DIAQYNLGISASIGIAV 390 Query: 460 YPRDGQSIEALMTNADSAMYTAKSAGAGLYRFYDASLNAIAVRGLELLGRFRQAIKDDEF 519 YP DG + L+ +AD+AMY KS G Y F++AS+N A L+++ R A++ EF Sbjct: 391 YPEDGSTRHDLLIHADAAMYHTKSTGRNGYHFFEASMNINAHNQLQVIQDLRTALERKEF 450 Query: 520 CLHYQPKVELQDYRVVGMEALIRWQHPEHGLIYPGEFIGLAETHDLVQPLGPWIIEAVCR 579 LHYQPK D VVG EAL+RWQHP G++ P +FI LAE L+ P+G W+++ CR Sbjct: 451 RLHYQPKFNTTDGVVVGAEALLRWQHPIRGIVAPADFISLAEKTGLIVPIGEWVLDEACR 510 Query: 580 QLAQWRDEGLPLVPVAINVSAKQLNDERLIATVHDALRRYHLSADLLEIEVTESCFISDL 639 Q+ +W DEG +A+N+S+ Q +++ L+ V + L R +L A L +EVTES + ++ Sbjct: 511 QMRKWYDEGYQQWKIAVNLSSVQFSNDNLVEMVKETLARNNLPATCLMLEVTESTAMHNV 570 Query: 640 EQARQTLEKLRDEGLRIYLDDYGTGYSSLSHIKTLPVYALKIDRSFVRDIRNDNSDGMIV 699 E + LE+L G+ I +DD+GTGYSSL ++K LP LKIDR F+RD+ + + D IV Sbjct: 571 EASLTILEQLVSLGVEISIDDFGTGYSSLLYLKRLPATELKIDRGFIRDLAHGSDDASIV 630 Query: 700 ASTVTLARNLGLKVVAEGVETREQLMHLKLMGCDEVQGFYLQRPVAPAQLV 750 ++ V L R+L L++VAEGVET +Q +L +GCD +QG+++ P+A Q + Sbjct: 631 SAIVALGRSLNLRIVAEGVETEKQQEYLTTLGCDTLQGYFMGHPMASEQFM 681 >gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 910 Score = 371 bits (952), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/440 (41%), Positives = 284/440 (64%), Gaps = 3/440 (0%) Query: 316 IHQLEQEKSRAYQLASHDYLTGIPNRMLFYELAATELSRARRSRNLYALFFLDLDKFKLI 375 I ++Q ++ ++LASHD LTG+PNR L + ++ + R+ + + +DLD+FK + Sbjct: 462 ITPMKQYETTLHRLASHDVLTGLPNRALLQDRLENAIAYSARNGHAVWVVLVDLDRFKFV 521 Query: 376 NDTLGHAVGDALLQEVARRLRAAVREYDLVARLGGDEFVVLVSEIRDEET--VAEIADKL 433 NDT+GH GD LL+ ++ RL+A+VRE D VARLGGDEFV+++ E D + +++ ++ Sbjct: 522 NDTMGHQAGDVLLKIISDRLQASVRESDTVARLGGDEFVLVLPECGDGPSGYSSDVIQRI 581 Query: 434 VETLRAPYPDLLGCDVETSPSIGIALYPRDGQSIEALMTNADSAMYTAKSAGAGLYRFYD 493 +E + P + G + S S+GIA+YP DG L+ +AD AMY +K G ++FY Sbjct: 582 MEAVVKPLT-IQGSEFFLSCSMGIAVYPNDGADPTTLLAHADVAMYRSKELGRNNFQFYT 640 Query: 494 ASLNAIAVRGLELLGRFRQAIKDDEFCLHYQPKVELQDYRVVGMEALIRWQHPEHGLIYP 553 ++N A+ L + G R AI+ +E LHYQP+V+L +VG+EAL+RW HP G++ P Sbjct: 641 PAMNDQALERLRIEGELRHAIELNELVLHYQPQVDLHTGAIVGLEALVRWNHPILGMVQP 700 Query: 554 GEFIGLAETHDLVQPLGPWIIEAVCRQLAQWRDEGLPLVPVAINVSAKQLNDERLIATVH 613 G FI LAE L+ P+G W+++ CRQ W+D G + +A+N+SA+Q L+ ++ Sbjct: 701 GSFISLAEETGLIIPIGAWVLQTACRQAKAWQDMGFTQLRIAVNLSARQFTQASLLESIK 760 Query: 614 DALRRYHLSADLLEIEVTESCFISDLEQARQTLEKLRDEGLRIYLDDYGTGYSSLSHIKT 673 D L+ L A LEIE+TES ++D+E+ TL L+ G+++ +DD+GTG+SSL+++K Sbjct: 761 DTLQETGLEARFLEIELTESSVMADIERNILTLRDLKSLGVQLSVDDFGTGHSSLAYLKR 820 Query: 674 LPVYALKIDRSFVRDIRNDNSDGMIVASTVTLARNLGLKVVAEGVETREQLMHLKLMGCD 733 P+ LKIDRSFVRDI + D IV+S ++LA NL L V+AEGVET Q+ L+ GC+ Sbjct: 821 FPIDTLKIDRSFVRDIAINQDDASIVSSIISLAHNLKLNVIAEGVETASQMDILRAQGCN 880 Query: 734 EVQGFYLQRPVAPAQLVPLL 753 E+QG+Y +P+ Q+ LL Sbjct: 881 EIQGYYFCKPLPSDQIETLL 900 >gi|152981134|ref|YP_001352907.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 898 Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust. Identities = 185/439 (42%), Positives = 275/439 (62%), Gaps = 6/439 (1%) Query: 320 EQEKSRAYQLASHDYLTGIPNRMLFYELAATELSRARRSRNLYALFFLDLDKFKLINDTL 379 E+E SR LA+ D LT +PNR F L AR + + A+ F+DLD FK +NDTL Sbjct: 458 EREMSR---LATEDGLTALPNRHWFMSYLPKALENARANATMLAILFIDLDDFKNVNDTL 514 Query: 380 GHAVGDALLQEVARRLRAAVREYDLVARLGGDEFVVLVSEIRDEETVAEIADKLVETLRA 439 GH+ GD LL VA+RLR+ +R D V R+GGDEF V++ I EE A IA + + LR Sbjct: 515 GHSAGDQLLCTVAKRLRSVLRPSDKVIRIGGDEFTVILEAIHSEEEAAHIAHAINQALRE 574 Query: 440 PYP---DLLGCDVETSPSIGIALYPRDGQSIEALMTNADSAMYTAKSAGAGLYRFYDASL 496 P+ D SIGI+++PRDGQ +E L+ NAD AMY AK+ G +RFYD +L Sbjct: 575 PFEISRDTTSQKNRIGGSIGISIFPRDGQDVETLVKNADIAMYAAKTGSKGQFRFYDHTL 634 Query: 497 NAIAVRGLELLGRFRQAIKDDEFCLHYQPKVELQDYRVVGMEALIRWQHPEHGLIYPGEF 556 L +QAIK+D+F ++YQP+V+ Q +++G+EALIRWQHP GL+ P +F Sbjct: 635 YEDIKMRLNTEQELQQAIKEDQFLIYYQPRVQTQTGKLLGIEALIRWQHPTRGLVLPNDF 694 Query: 557 IGLAETHDLVQPLGPWIIEAVCRQLAQWRDEGLPLVPVAINVSAKQLNDERLIATVHDAL 616 IGLAE L+ P+G +++ VC QLA W +G+ VPV++NVS Q N+ ++ ++ +L Sbjct: 695 IGLAEESGLINPIGELVVDKVCAQLASWLKQGVEAVPVSVNVSPHQFNEGKVKKSIAASL 754 Query: 617 RRYHLSADLLEIEVTESCFISDLEQARQTLEKLRDEGLRIYLDDYGTGYSSLSHIKTLPV 676 ++ + A LLEIE+TES + ++ L + G+++++DD+GTGYSSLS ++ L + Sbjct: 755 AKHGIPASLLEIELTESAMMRNIGDIFDELTAINAMGIKVHVDDFGTGYSSLSLLQRLDM 814 Query: 677 YALKIDRSFVRDIRNDNSDGMIVASTVTLARNLGLKVVAEGVETREQLMHLKLMGCDEVQ 736 LKID++F + + + V++A+ LG++VVAEGVET EQL L+ + CDEVQ Sbjct: 815 DILKIDQAFTSQLGRGKDGEIFFTAIVSMAKALGMRVVAEGVETLEQLHILQTLSCDEVQ 874 Query: 737 GFYLQRPVAPAQLVPLLQK 755 G+Y+ P+ + +++K Sbjct: 875 GYYVAWPLPADNIADIIRK 893 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.138 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,638,403 Number of extensions: 68647 Number of successful extensions: 261 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 222 Number of HSP's successfully gapped: 34 Length of query: 761 Length of database: 1,221,021 Length adjustment: 91 Effective length of query: 670 Effective length of database: 884,594 Effective search space: 592677980 Effective search space used: 592677980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)