BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3717.p
         (298 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979804|ref|YP_001354035.1| phosphonate transport system su...   269   1e-73
gi|152980686|ref|YP_001354731.1| phosphonate ABC-type transport ...   120   8e-29

>gi|152979804|ref|YP_001354035.1| phosphonate transport system
           substrate-binding protein [Janthinobacterium sp.
           Marseille]
          Length = 288

 Score =  269 bits (688), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 133/267 (49%), Positives = 181/267 (67%), Gaps = 3/267 (1%)

Query: 32  CERPQRLRFSFVPQGRGNDQQTALNPLIEELRERLKMPVDVVVPTSYGSVVEGLIAGAVD 91
           CERP RL FS VPQ        +L PL  +L+  L +PV+VV+PTSYG+VVE L++GAVD
Sbjct: 25  CERPARLHFSLVPQSDLQKDVASLKPLFADLQTALGIPVEVVMPTSYGAVVEDLLSGAVD 84

Query: 92  VARLGPASYVTARKGDPQITPFASMQQVEPNFAAQGGVSSVYYALLITRQQGPYDSVASL 151
           +ARLGPA+YV+A+K DP IT FA++ +  P    Q    + Y+++LI R  GPY ++ SL
Sbjct: 85  LARLGPAAYVSAKKQDPGITAFATVSRKMP---GQTEEDTFYHSVLIVRSNGPYQTIESL 141

Query: 152 KGKVLVLADPESTSGSLIPRHIFARQYKLQLDQYFSRIGYSGNHEQSVMAVLQRHADAAF 211
           +GK L L DP+STSG+LIPRH+F R  +  L++YF ++ YSG H+QS+  + +   DAAF
Sbjct: 142 RGKSLALVDPDSTSGALIPRHVFPRVVQTPLEKYFGQLVYSGAHDQSMQNLKKGKIDAAF 201

Query: 212 VASTNLSRMISDGKLKKSDLRVLWRSAPIPFDPFVYRGQLCADIRHTIRAVFLDKNALRV 271
           ++S +L+  +++  +K  D RVLWRSA IP +PFV RG+LCADI+  I AVFLD      
Sbjct: 202 ISSASLAMPVANSGVKTEDFRVLWRSAAIPRNPFVLRGRLCADIKKKIIAVFLDSGGNAN 261

Query: 272 RLTLDNLRATHFVPVRDADYQIIRALP 298
              +  L  T FVPV D DYQI+R LP
Sbjct: 262 ENLMRQLNVTRFVPVSDKDYQIVRDLP 288


>gi|152980686|ref|YP_001354731.1| phosphonate ABC-type transport
           system substrate-binding protein [Janthinobacterium sp.
           Marseille]
          Length = 286

 Score =  120 bits (302), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 140/297 (47%), Gaps = 22/297 (7%)

Query: 1   MKRLLKTVLLGAAVALSASTTAPALAGGKSACERPQRLRFSFVPQGRGNDQQTALNPLIE 60
           MK +   +LL A   LS + TA       +    P+ L+ + +P    +       PL  
Sbjct: 1   MKSIFTALLLSAITLLSGAATA-------APNPDPETLKVALLPDENASTVIKNNKPLEL 53

Query: 61  ELRERLKMPVDVVVPTSYGSVVEGLIAGAVDVARLGPASYVTARKGDPQITPFASMQQVE 120
            L + L   ++++V T Y S++E +  G +D+A  GP SYV AR+   +I PFA+++Q  
Sbjct: 54  YLEKALGKKIELIVTTDYSSMIEAMRHGRIDLAYFGPLSYVLARQKS-EIEPFAAIKQ-- 110

Query: 121 PNFAAQGGVSSVYYALLITRQQGPYDSVASLKGKVLVLADPESTSGSLIPRHIFARQYKL 180
                +G  S+ Y A+LI       +S+A +  K +   D  STS  LIP+ + A    L
Sbjct: 111 -----KG--STTYQAVLIVNTGAGINSIADIANKDVAYGDKASTSSHLIPKSMLAEGGLL 163

Query: 181 QLDQYFSRIGYSGNHEQSVMAVLQRHADAAFVASTNLSRMISDGKLKKSDLRVLWRSAPI 240
              QY  R  + G H+   +AV   HA A  ++      ++  G +  + ++VL  S P 
Sbjct: 164 AGTQY--REHFVGAHDAVALAVQNGHAQAGGLSKPIFEVLVQRGMIDPNKVKVLAESKPF 221

Query: 241 PFDPFVYRGQLCADIRHTIRAVFLDKNALRVRLTLDNLRATHFVPVRDADYQIIRAL 297
           P  P+  R  L  +++  IR VFL+     V   L   +A  F P  D DY ++R L
Sbjct: 222 PQYPWTMRSNLKPELKAKIRTVFLEMKDPEV---LKPFKAEGFGPASDKDYDVVRNL 275


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 619,154
Number of extensions: 24171
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 2
Length of query: 298
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 215
Effective length of database: 914,170
Effective search space: 196546550
Effective search space used: 196546550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)