BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3714.p
         (233 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980093|ref|YP_001352031.1| hypothetical protein mma_0341 [...   288   2e-79
gi|152981077|ref|YP_001353697.1| hypothetical protein mma_2007 [...   156   9e-40

>gi|152980093|ref|YP_001352031.1| hypothetical protein mma_0341
           [Janthinobacterium sp. Marseille]
          Length = 234

 Score =  288 bits (738), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 159/233 (68%), Positives = 177/233 (75%)

Query: 1   MSSIAQRLQLVQQQIARATQEAGRASASVQLLAVSKTFGPQAVAEAVQAGQRAFGENYLQ 60
           MS I Q LQ V+Q+I  A   A R    V+LLAVSKTFG +AV  A +AGQ AFGENYLQ
Sbjct: 1   MSVIRQNLQAVRQRITDAANSARRDVHGVELLAVSKTFGAEAVIAAAEAGQGAFGENYLQ 60

Query: 61  EALDKIAAMPSLVPGIALEWHFIGPIQSNKTRPIAEHFAWVHSVDRLKIAQRLSEQRPAE 120
           EAL+KIA + +  P + LEWHFIGPIQSNKTRPIAE+F WVHSVDR KIAQRLSEQRPA 
Sbjct: 61  EALEKIAEVKATRPDLQLEWHFIGPIQSNKTRPIAENFDWVHSVDREKIAQRLSEQRPAH 120

Query: 121 LGPLNICLQVNISGEASKSGLSPQELPAVAAQVAQLPHLRLRGLMAIPAPSENPAQQRAA 180
           L PLNICLQVNISGEASKSG+ P E  AVA  +A LP L LRGLMAIP    +  QQRA 
Sbjct: 121 LPPLNICLQVNISGEASKSGVLPSEALAVAQAIAALPRLCLRGLMAIPEAVGDAEQQRAP 180

Query: 181 FAAVRGLYEQLRQSGLPLDTLSMGMSADLEAALAEGASIVRIGSAIFGARHYA 233
           F  +  L EQLR  GL LDTLSMGMS D++AA+AEGA+IVRIGSAIFG R YA
Sbjct: 181 FRQMHALLEQLRAEGLKLDTLSMGMSGDMDAAIAEGATIVRIGSAIFGTREYA 233


>gi|152981077|ref|YP_001353697.1| hypothetical protein mma_2007
           [Janthinobacterium sp. Marseille]
          Length = 267

 Score =  156 bits (395), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 98/233 (42%), Positives = 132/233 (56%), Gaps = 6/233 (2%)

Query: 1   MSSIAQRLQLVQQQIARATQEAGRASASVQLLAVSKTFGPQAVAEAVQAGQRAFGENYLQ 60
           +    + L  VQ +IA A +  GR  A V+LL VSKT    ++  A  AG R  GEN +Q
Sbjct: 20  VEDFIRNLTAVQLRIAAACRCVGRDPAEVRLLPVSKTKPEASLRLAYAAGCRTLGENKVQ 79

Query: 61  EALDKIAAMPSLVPGIALEWHFIGPIQSNKTRPIAEHFAWVHSVDRLKIAQRLSEQRPAE 120
           EA  K  AM  L     L W  IG +Q+NK + +A       ++D L++A+ L  +   E
Sbjct: 80  EAHHKWEAMQDLTD---LHWSVIGHLQTNKAKLVARFATEFQALDSLRLAEALDRRLQIE 136

Query: 121 LGPLNICLQVNISGEASKSGLSPQELPAVAAQVAQLPHLRLRGLMAIPAPSENPAQQRAA 180
              L++ +QVN SGEASK GL+P ++ A    +     LR+RGLM +   S    + R  
Sbjct: 137 GRSLDVFVQVNTSGEASKYGLAPADVAAFVQALPSYSALRVRGLMTLALFSSEEERVRQC 196

Query: 181 FAAVRGLYEQLRQS---GLPLDTLSMGMSADLEAALAEGASIVRIGSAIFGAR 230
           F  +R L EQLRQS   G+ LD LSMGMS D E A+ EGA++VR+G AIFGAR
Sbjct: 197 FFLLRTLREQLRQSAPAGISLDELSMGMSGDFEIAIEEGATVVRVGQAIFGAR 249


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 498,257
Number of extensions: 19696
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 2
Length of query: 233
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 153
Effective length of database: 925,261
Effective search space: 141564933
Effective search space used: 141564933
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)