BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3713.p
         (270 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979991|ref|YP_001352032.1| pyrroline-5-carboxylate reducta...   355   2e-99

>gi|152979991|ref|YP_001352032.1| pyrroline-5-carboxylate reductase
           [Janthinobacterium sp. Marseille]
          Length = 274

 Score =  355 bits (911), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 176/269 (65%), Positives = 219/269 (81%)

Query: 1   VKIAFIGGGNMASALIGGLVGKVAAAQDIHVVDLNADALQSLQDKFGVATAQTIDGAIAS 60
           +KI+FIGGGNMA+ALIGGL GK+ AA +IHVVD+NA++L  LQ +FGV T+  ID  +A+
Sbjct: 5   LKISFIGGGNMAAALIGGLAGKLTAAGNIHVVDINAESLAKLQQQFGVKTSSEIDATLAA 64

Query: 61  VDVVVLAVKPQQMREVVATLKPFIGAQLIVSIAAGIRMVDLSRWLDGHQAIVRAMPNTPA 120
            DVVVLAVKPQQM+ VVA L P I  QL++SIAAGIR VDLSRWL GH AIVR MPNTPA
Sbjct: 65  SDVVVLAVKPQQMKGVVAQLVPHIKGQLVLSIAAGIRAVDLSRWLKGHNAIVRTMPNTPA 124

Query: 121 LIGRGISGVVPHEQVSTLQRAQADTILKAVGETLWLAQEAQLDAVTAVSGSGPAYVFYFL 180
           LIG+GI+G+V  E VS  QRA AD I++AVGET+WL  E  +D VTAVSGSGPAYVFYF+
Sbjct: 125 LIGKGITGMVATEGVSKEQRAAADAIMRAVGETVWLDDEKLIDPVTAVSGSGPAYVFYFI 184

Query: 181 EAMEQAAAQLGLSRQEGLELAKATFAGATELARRSEESVAILRERVTSKGGTTYAALTSL 240
           EAM+QAA ++GL+ ++G  LA +TF GA +LA ++ + VA+LRERVTSKGGTTYAAL+S+
Sbjct: 185 EAMQQAAQEMGLTAEQGNALAISTFVGAAQLAAQASDPVAVLRERVTSKGGTTYAALSSM 244

Query: 241 EQSGVKAAIVTALQAAATRSKELGDEFGQ 269
           E SGVK +I+ A++AAA R + LG+EFGQ
Sbjct: 245 EASGVKQSIINAMKAAAARGQALGEEFGQ 273


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.130    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 574,580
Number of extensions: 22196
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 188
Effective length of database: 917,867
Effective search space: 172558996
Effective search space used: 172558996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)