BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3712.p
         (252 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980876|ref|YP_001353825.1| lipoprotein nlpD precursor [Jan...   201   3e-53
gi|152981371|ref|YP_001354913.1| M23/M37 familypeptidase [Janthi...    75   5e-15
gi|152981693|ref|YP_001354696.1| M23B family peptidase [Janthino...    61   6e-11

>gi|152980876|ref|YP_001353825.1| lipoprotein nlpD precursor
           [Janthinobacterium sp. Marseille]
          Length = 317

 Score =  201 bits (512), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 114/275 (41%), Positives = 152/275 (55%), Gaps = 49/275 (17%)

Query: 27  ATADNDGYYTVKRGDTLYSIGRDFDQSPANLRTWNRLRNPDDLEVGQRILVRPPVGVVAR 86
           A  ++   YTV++GDTLY I  DF QS + +  WN L NP+D++VGQ + V PP   VAR
Sbjct: 43  AAVEDRTTYTVRKGDTLYRIALDFGQSYSEIVAWNNLANPNDIKVGQVLRVAPPDAPVAR 102

Query: 87  TGAGQSPRPAASSAS-----GTPRKSTTRPATKPATKPQDDD---DDAPAPA-------- 130
           +G  Q+   A+SS       G P  +T   +    T P+ +     DA            
Sbjct: 103 SGGAQTGAIASSSVVESRPLGAPSSTTVSASATNKTSPRGEKRPYSDATLAEMQKPDSTP 162

Query: 131 ---------------------------------DAKLDWMWPTQGKSAPSADSYKKGIDI 157
                                            D  + W+WP +GK   + D  +KG+DI
Sbjct: 163 VVAAAPAATPATATAAKPATPAEAAAPVALAADDDSVSWIWPAEGKVVGTFDDGRKGLDI 222

Query: 158 SGSQGQSVVAAAAGKVTYAGHGIRGYGNMVIIKHTPQLLSVYAHNDSILVKEGQMVTRGQ 217
           +G  GQ+V+AA AGKV YAG GIRGYGN+VI+KHT  LLS YAHN +ILVKEGQ V +GQ
Sbjct: 223 AGKSGQAVLAAGAGKVMYAGSGIRGYGNLVIVKHTSNLLSAYAHNKAILVKEGQNVNKGQ 282

Query: 218 QIATMGNSDTNKVKLYFEIRRNGKPVNVMALLPAR 252
           +IA MG+SD++ VKL+FEIR+ GKPV+    LP+R
Sbjct: 283 KIAEMGDSDSDSVKLHFEIRQQGKPVDPSKFLPSR 317


>gi|152981371|ref|YP_001354913.1| M23/M37 familypeptidase
           [Janthinobacterium sp. Marseille]
          Length = 466

 Score = 74.7 bits (182), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 2/93 (2%)

Query: 153 KGIDISGSQGQSVVAAAAGKVTYAGHGIRGYGNMVIIKHTPQLLSVYAHNDSILVKEGQM 212
           KG+ I   +G  V A AAG+V +A   +RG+GN++I+ H  Q +++Y +N S+L   G  
Sbjct: 367 KGLFIRAEEGSEVKAVAAGRVVFA-EWLRGFGNLIIVDHGSQYMTIYGNNQSVLKHAGDT 425

Query: 213 VTRGQQIATMGNSDTNKVK-LYFEIRRNGKPVN 244
           V  G  IA+ GNS  N+   LYFE+R  G+  +
Sbjct: 426 VKSGDVIASTGNSGGNEQSGLYFEMRHQGRAFD 458


>gi|152981693|ref|YP_001354696.1| M23B family peptidase
           [Janthinobacterium sp. Marseille]
          Length = 314

 Score = 61.2 bits (147), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 7/103 (6%)

Query: 139 PTQGKSAPSADSYKKGIDISGSQGQSVVAAAAGKVTYAGHGIRGYGNMVIIKHTPQLLSV 198
           P  G+SA       +GID +   G  +VAAA G VT A    + YGNM+ I H   +++ 
Sbjct: 197 PFSGRSA-----MHEGIDFAAPIGTPIVAAAGGVVTVAEFHPQ-YGNMMEIDHGNDMITR 250

Query: 199 YAHNDSILVKEGQMVTRGQQIATMGNSD-TNKVKLYFEIRRNG 240
           YAH   +L++ G +V RGQ IA +G +  +    L+FE+R  G
Sbjct: 251 YAHTSRLLMQVGDIVRRGQHIADIGTTGRSTGPHLHFEVRVKG 293


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 507,720
Number of extensions: 19011
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 4
Length of query: 252
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 171
Effective length of database: 921,564
Effective search space: 157587444
Effective search space used: 157587444
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)