BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3707.p
         (284 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980249|ref|YP_001352037.1| 4-hydroxybenzoate octaprenyltra...   414   e-117
gi|152979776|ref|YP_001354834.1| protoheme IX farnesyltransferas...    63   2e-11

>gi|152980249|ref|YP_001352037.1| 4-hydroxybenzoate
           octaprenyltransferase [Janthinobacterium sp. Marseille]
          Length = 284

 Score =  414 bits (1065), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/284 (72%), Positives = 243/284 (85%)

Query: 1   MDRLRLYALLVRAHKPIGILLLLWPTLIALWLAAGGPPDWPILVIYVLGTVLMRSAGCAI 60
           M+RL+LY  L+R HKPIGILLLLWPTL ALW+A+ G PDW ++ I+ LGTVLMRSAGCA+
Sbjct: 1   MNRLQLYFRLIRLHKPIGILLLLWPTLWALWMASDGKPDWTLVAIFTLGTVLMRSAGCAV 60

Query: 61  NDYADRDFDRHVKRTEQRPLTSGKIQSWEALMVAGVLALVSFLLILPLNALTLQLSVAAV 120
           NDYADRDFD+HV+RT  RP+TSGKI+ +EAL+VA VL L++F LI PLN LT QLS+AAV
Sbjct: 61  NDYADRDFDKHVQRTVDRPITSGKIKPYEALLVALVLTLLAFALIWPLNTLTKQLSIAAV 120

Query: 121 LIAGSYPYFKRFFAIPQAYLGIAFGFGIPMGFASVTGTVPLAAWVLLVANIFWAVAYDTE 180
           +IA +YPYFKRFFAIPQAYLGIAFGFGIPMGFA+V  TVP AAW LLVAN+FW+VAYDTE
Sbjct: 121 IIAATYPYFKRFFAIPQAYLGIAFGFGIPMGFAAVQNTVPAAAWWLLVANVFWSVAYDTE 180

Query: 181 YAMVDREDDLKIGIKTSAITFGRYDVAAVMLCYGVALALIWVVGLQYGLGLWFSAGMLVA 240
           YAMVDREDDLK+G+KTSAITFGRYDVA +M CY + L +I +VG Q+GL +WF AG+L+A
Sbjct: 181 YAMVDREDDLKLGMKTSAITFGRYDVAIIMFCYAMTLGIIGIVGWQFGLRIWFVAGLLLA 240

Query: 241 CGFAGYHYTLIRERDRMRCFAAFNNNNWLGAAIFAGVALDYLMR 284
              A YHYTLIR R+R  CFAAFN+NNWLG AIF GVALDYL+R
Sbjct: 241 AVCAAYHYTLIRSRERAGCFAAFNHNNWLGGAIFGGVALDYLLR 284


>gi|152979776|ref|YP_001354834.1| protoheme IX farnesyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 294

 Score = 62.8 bits (151), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 123/275 (44%), Gaps = 5/275 (1%)

Query: 15  KPIGILLLLWPTLIALWLAAGGPPDWPILVIYVLGTVLMRSAGCAINDYADRDFDRHVKR 74
           KP    L ++  +I ++LA    P W I+V   +G  L+  A  AIN   +R+ D  + R
Sbjct: 19  KPRVTQLAVFCAVIGMFLATPELPSWKIVVAATIGIWLLAGAAFAINCLVEREIDSRMAR 78

Query: 75  TEQRPLTSGKIQSWEALMVAGVLALVSFLLILP-LNALTLQLSVAAVLIAGSYPYFKRFF 133
           T +RP+  G+I   + L+ +G++      ++   +N LT+ L+ A  +            
Sbjct: 79  TARRPMARGEITVPQTLVFSGLIGGAGMWVLYNFVNPLTMWLTFATFVGYAVIYTIILKP 138

Query: 134 AIPQAYL--GIAFGFGIPMGFASVTGTVPLAAWVLLVANIFWAVAYDTEYAMVDREDDLK 191
           A PQ  +  G++      +G+A+V   +P+ AW+L++    W   +    A+  R++  K
Sbjct: 139 ATPQNIVIGGLSGAMPPALGWAAVANDLPMQAWILVLIIFIWTPPHFWALALYRRDEYAK 198

Query: 192 IGIKTSAITFGRYDVAAVMLCYGVALALIWVVGLQYGLG--LWFSAGMLVACGFAGYHYT 249
            G+    +T G       +  Y +AL    ++    G+   ++  +  ++   F  Y + 
Sbjct: 199 SGLPMLPVTHGTEFTQFHIWLYTIALVATTMLPFAVGMSGLIYLVSVAILDIIFVWYAWQ 258

Query: 250 LIRERDRMRCFAAFNNNNWLGAAIFAGVALDYLMR 284
           + R    M     F  +    + +FA + +D+ +R
Sbjct: 259 VYRHYTDMIARKMFAYSIIYLSLLFAALLVDHYLR 293


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.330    0.144    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 666,542
Number of extensions: 27848
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 2
Length of query: 284
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 202
Effective length of database: 917,867
Effective search space: 185409134
Effective search space used: 185409134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)