BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3703.p (364 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 221 6e-59 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 217 9e-58 gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport sy... 179 3e-46 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 142 4e-35 gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-bi... 141 8e-35 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 221 bits (563), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 118/290 (40%), Positives = 174/290 (60%), Gaps = 8/290 (2%) Query: 1 MAAIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEVS 60 MA + ++ + + +G V+ I I GEF ++GPSGCGK+TLLRM+AG + Sbjct: 1 MALLEIRNLTRRFGDNT----VVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPD 56 Query: 61 SGQIVIGQRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDERVQR 120 +GQI++ + + P++R + VFQNYAL+PHMTV N+A+ L++ K+EI ++V Sbjct: 57 AGQILLDGVDLTGVPPEQRPVRTVFQNYALFPHMTVGGNIAFPLEMANTPKAEIQKKVDE 116 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 A + L R P +LSGGQRQRV++ RA+V +P + L DEPLS LDA+LR QM++E+ Sbjct: 117 ALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIEL 176 Query: 181 QKLHANLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 L + T +YVTHDQ EA+ L R+ VMN+G EQ+ P +Y+ P + FVA FIG+ Sbjct: 177 INLQKEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVADFIGT 236 Query: 241 PPMNLLRGKLSA-DGGSFEVDQGGAADTVRLPQALPAAAGQERILGVRPE 289 NL G ++ DG +D G V+ A G + + +RPE Sbjct: 237 --CNLFDGVVTQIDGNMMWLDVPGMG-AVKAFTAPSVTVGSKGTIALRPE 283 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 217 bits (553), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 107/265 (40%), Positives = 173/265 (65%), Gaps = 15/265 (5%) Query: 3 AIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEVSSG 62 +I +K ++K +G ++ + + GE ++GPSGCGK+TLLR++AGLE+ G Sbjct: 2 SIEVKNIQKQFGNFV----ALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHG 57 Query: 63 QIVIGQRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGL----SKSEIDERV 118 Q+++ + +ER + VFQ+YAL+ HMTV++N+A+GL+++ S+S+I E+V Sbjct: 58 QVLLDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIKEKV 117 Query: 119 QRAAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRL 178 + +++L L +R P QLSGGQRQR+A+ RA+ +P V L DEP LDAK+R ++R Sbjct: 118 TKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 179 EIQKLHANLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFI 238 +++LH +L TS++VTHDQ EA+ + ++++MN+G EQIG P +VY PA+ FV F+ Sbjct: 178 WLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGFL 237 Query: 239 GSPPMNLLRGK-----LSADGGSFE 258 G+ +NL G+ L + G +FE Sbjct: 238 GN--VNLFHGRVHEGILQSSGIAFE 260 >gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 363 Score = 179 bits (453), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 118/366 (32%), Positives = 198/366 (54%), Gaps = 19/366 (5%) Query: 2 AAIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEVSS 61 A + L+ +R Y G+ +++H + + GE ++G SGCGK+T+LR +AG E + + Sbjct: 9 AHLQLETIRVGYQLGSHMHEIVHSLSFALQRGEIGCLLGQSGCGKTTVLRAIAGFESLIA 68 Query: 62 GQIVIGQRVVNDLE----PKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDER 117 G+I +G + +++ + P+ R + +VFQ+YAL+PH++V N+ +GL+ L+ +E + R Sbjct: 69 GRITLGGKELSNAQHTTVPEARHVGVVFQDYALFPHLSVSDNIGFGLR--KLAAAERNGR 126 Query: 118 VQRAAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMR 177 + + A++ L A ++ P +LSGGQ+QRVA+ RA+ +P + L DEP SNLD LR ++ Sbjct: 127 INKLLALVGLQAQEKKFPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLA 186 Query: 178 LEIQKLHANLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASF 237 E++ + + TT++ VTHDQ EA + ++ VM GV Q +Y RPA FVA F Sbjct: 187 SEVRDILKEVGTTAVLVTHDQHEAFAIADQIGVMQDGVIVQWDQAYNLYHRPANRFVADF 246 Query: 238 IGSPPMNLLRGKLSADGGSFEVDQGGAADTVRLPQALPAAAGQER---ILGVRPEHLLPI 294 IG + G + ++ G T+ L Q LP ++ + +R + + Sbjct: 247 IGLGV--FVPGTVDKQRQDVAIELG----TLPLCQGLPVCEVDDQNAVDVLLRAD---DV 297 Query: 295 LDGSEAQLALEVELVEALGAELLVHARC-GGQSLVLRCPANVPVSTGQRIGASFGAADVH 353 + + L EV GAE L + GQ L+ P++ + G+RIG A V Sbjct: 298 IHDDNSPLKAEVIRKAFRGAEFLYTLKLPSGQQLLALVPSHHDHALGERIGIRLEAEHVV 357 Query: 354 WFDVQS 359 F Q+ Sbjct: 358 TFPKQA 363 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 142 bits (357), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 75/214 (35%), Positives = 121/214 (56%), Gaps = 3/214 (1%) Query: 1 MAAIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEVS 60 + AI +K V K + G + V + ++ I GEF+ ++G SGCGKSTLLR++AG E S Sbjct: 11 LPAIDIKGVSKVFSIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTS 70 Query: 61 SGQIVIGQRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDERVQR 120 SG + ++ P+ MVFQ+Y L+P +TV +N+ +G + + L K++++E Sbjct: 71 SGSANMYGMPIDGPSPER---GMVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSAY 127 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 ++ L P QLSGG +QRVA+ R + V L DEP LDA R +++ ++ Sbjct: 128 YTDMVGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDL 187 Query: 181 QKLHANLRTTSLYVTHDQVEAMTLGQRMIVMNRG 214 ++ + T ++VTH EA+ L R++VM G Sbjct: 188 LEIWERTKVTVVFVTHAVEEAVMLSDRVVVMTAG 221 >gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 268 Score = 141 bits (355), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 131/230 (56%), Gaps = 7/230 (3%) Query: 4 IHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEVSSGQ 63 I ++ ++ + + ++ ++ GEFI ++G SGCGKSTLL ++AGL + + G Sbjct: 9 IDIQHAEMSFSTKKGIFNALTNVNLTVSKGEFITLIGHSGCGKSTLLNLIAGLTQATGGM 68 Query: 64 IVIGQRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLK---IQGLSKSEIDERVQR 120 ++ G R + P+ A+VFQN++L P +T Y+N+ ++ SK+E+ R + Sbjct: 69 LLCGNREIAGPSPER---AVVFQNHSLLPWLTCYENVYLAVERVFSATESKAELKARTRA 125 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 A A++ L ++ P ++SGG +QRV + RA+ +P V L DEP LDA R ++ E+ Sbjct: 126 ALALVGLSHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDEL 185 Query: 181 QKLHANLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEV-YARP 229 K+ A +T + VTHD EA+ L R++++ G + IG EV ARP Sbjct: 186 LKIVAATGSTVVMVTHDVDEAVLLSDRIVMLTNGPSATIGEILEVKLARP 235 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 768,578 Number of extensions: 29305 Number of successful extensions: 296 Number of sequences better than 1.0e-08: 62 Number of HSP's gapped: 217 Number of HSP's successfully gapped: 65 Length of query: 364 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 280 Effective length of database: 910,473 Effective search space: 254932440 Effective search space used: 254932440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)