BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3702.p (315 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 534 e-153 gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 115 4e-27 gi|152982152|ref|YP_001355350.1| LysR family transcriptional reg... 97 1e-21 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 86 3e-18 gi|152981638|ref|YP_001353293.1| LysR family transcriptional reg... 84 1e-17 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 534 bits (1375), Expect = e-153, Method: Compositional matrix adjust. Identities = 252/315 (80%), Positives = 285/315 (90%) Query: 1 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVVIFERGGTEVSVTPL 60 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGV +FERGG+E+S+TPL Sbjct: 17 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 76 Query: 61 GAQIVAQAERVLEQTAAIKEIANQNKDPLSGPLRLGIIYTIGPYLLPSLVKTMIERVPQM 120 GAQIVAQAERVLEQTAAIKEIA QNKDPL GP RLGIIYTI PYLLP LVKT+IERVPQM Sbjct: 77 GAQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKTIIERVPQM 136 Query: 121 PLILQENFTTRLIELLRQGELDAAIMALPFPEHGLNVLPLYDEEFMVALPRQHKWADRKQ 180 PL+LQENFT +L+ELLRQGELDAAI+ALPFP+ GL V P+YDE F+VA+P+ HKWA+R Sbjct: 137 PLVLQENFTVKLLELLRQGELDAAIVALPFPDQGLLVQPVYDEPFVVAVPKHHKWANRDS 196 Query: 181 IDARELKSETMLLLGNGHCFRDQVLEVCPEMSRFSTNGDGIARTFEGSSLETIRHMVSSG 240 + +LKSETMLLLGNGHCFRDQVLEVCPEMSRFST+GDGIARTFEGSSLETIRHMV+SG Sbjct: 197 VSTDDLKSETMLLLGNGHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRHMVASG 256 Query: 241 IGVTVLPRASIPDADSRDGMVRYVPFVAPAPSRRVVIAWRKSFTRQAAIDAVHQAVLTCK 300 IG+TVLP+ASIPD ++DGM+RY+PF P PSRRVV+ WRKSFTR AAI+AV QA+L+C Sbjct: 257 IGITVLPQASIPDMQAKDGMLRYIPFTQPGPSRRVVLVWRKSFTRGAAIEAVRQALLSCD 316 Query: 301 LNGVEMLTNETVTTA 315 L+GV ML +E ++ A Sbjct: 317 LHGVTMLPDEPLSEA 331 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 115 bits (287), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 84/288 (29%), Positives = 143/288 (49%), Gaps = 15/288 (5%) Query: 3 LTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVVIFERGGTEVSVTPLGA 62 L +L++ V VA E HFG AA + QP LS +I+ LE LGV +F R V++TP G Sbjct: 5 LRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTPAGI 64 Query: 63 QIVAQAERVLEQTAAIKEIANQNKDPLSGPLRLGIIYTIGPYLLPSLVKTMIERVPQMPL 122 ++ +A+R+L+QTAA+ ++ + SG L L + T +LP ++ E PQ+ + Sbjct: 65 ALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYPQVEI 124 Query: 123 ILQENFTTRLIELLRQGELDAAIMALPFPEHG---LNVLPLYDEEFMVALPRQHKWADRK 179 L+E T ++ L QG +D ++ P P+ L+ LP+ E ++A+P+ K K Sbjct: 125 DLREATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAVPKGLKAVRGK 184 Query: 180 QIDARELKSETMLLLGN---GHCFRDQVLEVCPEMSRFSTNGDGIARTFEGSSLETIRHM 236 Q A + +E L++ F D +L + G E ++TI + Sbjct: 185 QTVALQAVAELPLIIFPRRIAPAFHDAILACYRDAGLTPHIGQ------EAIQMQTIIGL 238 Query: 237 VSSGIGVTVLPRASIPDADSRDGMVRYVPFVAPAPSRRVVIAWRKSFT 284 VS+G+G+ ++P++ ++ + V Y P +AWR+ T Sbjct: 239 VSAGMGIALVPQSV---SNLKRPGVDYKALADKTPLVETGMAWRRDNT 283 >gi|152982152|ref|YP_001355350.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 312 Score = 97.1 bits (240), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 103/201 (51%), Gaps = 7/201 (3%) Query: 1 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVVIFERGGTEVSVTPL 60 M + +L Y+V +AREKHF AAE C V+QP LS A++ LE ELG+ I +RG TP Sbjct: 1 MFVRQLDYLVTLAREKHFARAAEICCVSQPALSAAVRNLETELGIAIVQRGQRFQGFTPE 60 Query: 61 GAQIVAQAERVLEQTAAIKEIANQNKDPLSGPLRLGIIYTIGPY--LLPSLVKTMIERVP 118 G +I+ A + L +K+ A+ ++ L+G LRLG I T P LL + + Sbjct: 61 GERILDWARQTLAALEGLKQEASMSRVKLTGTLRLGAIPTTMPIVSLLTGQCRAQHADLR 120 Query: 119 QMPLILQENFTTRLIELLRQGELDAAIMALPFPE-HGLNVLPLYDEEFMVALPRQHKWAD 177 Q+ L L T ++ L ELD + L +G +V PLY E +M+ L R+ D Sbjct: 121 QLVLSLS---TEEIMRRLDDFELDVGLTYLEDQRLNGFHVQPLYRERYML-LAREGAMLD 176 Query: 178 RKQIDARELKSETMLLLGNGH 198 K + E +E L L H Sbjct: 177 GKAEISWEEAAEFPLCLLTSH 197 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 85.9 bits (211), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 121/247 (48%), Gaps = 11/247 (4%) Query: 6 LKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVVIFERGGTEVSVTPLGAQIV 65 L+Y V VA E H AA+ + QP LS I+ LE ELGV +F R + +T G ++ Sbjct: 9 LRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTESGQALL 68 Query: 66 AQAERVLEQTAAIKEIANQNKDPLSGPLRLGIIYTIGPY-LLPSLVKTMIERVPQMPLIL 124 A +LEQ E + SG L +G + + +P++++ ++ P + + + Sbjct: 69 IDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQKSPGVIMAV 128 Query: 125 QENFTTRLIELLRQGELDAAIMALPF-PEHGLNVLPLYDEEFMVALPRQHKWADRKQIDA 183 +E+ T L+E LR LD A + P GL + + EE +VALP H+ A R++ Sbjct: 129 EESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPITHRLAQRRKSLP 188 Query: 184 RELKSETMLLLG---NGHCFRDQVLEVCPEMSRFSTNGDGIARTFEGSSLETIRHMVSSG 240 +E +L +G D V+ C + FS A+ +L T+ +V++G Sbjct: 189 LTALAEDDFILNRRPSGPGLYDSVIAAC-RAAGFSPRVVQEAK----KNLSTL-SLVAAG 242 Query: 241 IGVTVLP 247 +GV+++P Sbjct: 243 LGVSIVP 249 >gi|152981638|ref|YP_001353293.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 83.6 bits (205), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/248 (29%), Positives = 112/248 (45%), Gaps = 13/248 (5%) Query: 1 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVVIFERGGTEVSVTPL 60 M L L+ VAVA F AAE Q ++ IKKLEDE+G + ER GT + Sbjct: 1 MDLKSLRLFVAVAETGSFVAAAERHHTVQSNVTAHIKKLEDEVGAQLIER-GTPARPSSA 59 Query: 61 GAQIVAQAERVLEQTAAIKEIANQNKDPLSGPLRLGIIYTIGPYLLPSLVKTMIERVPQM 120 G ++A AER+++ A + +A +SG LR+G + T LP L+ P++ Sbjct: 60 GFALMAYAERMIQ--AHDEALALFKNGEVSGSLRVGAMETTTALRLPPLLTLFHASHPEV 117 Query: 121 PLILQENFTTRLIELLRQGELDAAIMALPFPEHGLNVLPLYDEEFMVALPRQHKWADRKQ 180 L L T +L+ L +G D +A L Y EE ++ K Sbjct: 118 DLKLTTGPTAKLVAGLNEGRFDCVFIAGKLENPRLYQYKAYREELVLVSASPMK----SM 173 Query: 181 IDARELKSETMLLLGNGHCFRDQVLEVCPEMSRFSTNGDGIARTFEGSSLETIRHMVSSG 240 A L++ T L+ G G +R +V + + FS+ R + SL+ I V +G Sbjct: 174 PSADTLRASTFLVFGQGCSYRQRVDVLLADSGVFSS------RMVDFGSLDAILGCVGAG 227 Query: 241 IGVTVLPR 248 +G ++P+ Sbjct: 228 MGYALMPK 235 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 712,470 Number of extensions: 29576 Number of successful extensions: 132 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 121 Number of HSP's successfully gapped: 19 Length of query: 315 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 232 Effective length of database: 914,170 Effective search space: 212087440 Effective search space used: 212087440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)