BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3701.p
         (303 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979926|ref|YP_001355314.1| hypothetical protein mma_3624 [...   125   2e-30

>gi|152979926|ref|YP_001355314.1| hypothetical protein mma_3624
           [Janthinobacterium sp. Marseille]
          Length = 269

 Score =  125 bits (315), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 125/248 (50%), Gaps = 4/248 (1%)

Query: 29  RTVDPVTGEFSSAHGNEEKEYRRLYFRELFRLQGELVKLQDWVVQTGHKVVIVFEGRDAA 88
           +  D   GE   + G++E++  +L   +  +   EL ++     +  HK++IV +G D +
Sbjct: 15  KVADAAAGEKPLSSGDKEQD--KLLVEQQAQQIAELQEI--LYAERKHKILIVLQGMDTS 70

Query: 89  GKGGVIKRITQRLNPRVARVAALPAPNDRERTQWYFQRYVSHLPAAGEIVLFDRSWYNRA 148
           GK G ++ +  +++P      A  +P+  E+   +  R    +PA GE  +F+RS Y   
Sbjct: 71  GKDGTVRGVFGKIDPLGVSSVAFKSPSTEEKAHDFLWRIHKQVPALGEFTIFNRSHYEDV 130

Query: 149 GVERVMGFCTDEQYEEFFRSVPEFERMLTRAGIQVIKYWFSITDEEQHLRFLSRIHDPLK 208
            + RV  +  D++ +  ++ + +FERML+  G  ++K++  I+ +EQ  R   RI DP K
Sbjct: 131 LITRVHDWIDDKECKRRYQHIRDFERMLSETGTVIMKFFLHISADEQKKRLEERIADPNK 190

Query: 209 QWKLSPMDLESRRRWEEYTKAKEVMLERTHIPEAPWWVVQAVDKKKARLNCIQHLLQQMP 268
            WK  P DLE R+ W  Y    E ++  T    APW+V+ A  K    L     +L+++ 
Sbjct: 191 HWKFDPADLEERKYWGAYQDQYEEVIRETDADHAPWYVIPADSKTHRNLVISSIVLEKLN 250

Query: 269 YAEVPHPP 276
             +   PP
Sbjct: 251 KLKPAFPP 258


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 661,804
Number of extensions: 24090
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 220
Effective length of database: 914,170
Effective search space: 201117400
Effective search space used: 201117400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)