BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3700.p
         (204 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982755|ref|YP_001353793.1| hypothetical protein mma_2103 [...   171   4e-44

>gi|152982755|ref|YP_001353793.1| hypothetical protein mma_2103
           [Janthinobacterium sp. Marseille]
          Length = 209

 Score =  171 bits (432), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 119/188 (63%), Gaps = 7/188 (3%)

Query: 16  RACIIGRVILSSSKTKRWHGNVEAIKAEFLNGVITQMTSYGDRVHFSMFGSVQKPHYEVI 75
           R    G  IL++ ++KRW G ++ + A++L  V+TQM +YGDRV F++ G  QKPHY+VI
Sbjct: 29  RVTFTGIRILNTKRSKRWDGKIDTLTADYLKDVVTQMKAYGDRVQFALNGPGQKPHYQVI 88

Query: 76  NSFDKKMAFDGNHHLHRAEETEFGPGNVTPIFTLDQIKRIVATGGSGTRSTPRSARAASA 135
           NSF+KKMAFD N+HL    E EF   N TP+ TL QI+  +A    G +    + RA   
Sbjct: 89  NSFEKKMAFDSNNHLLHPGEDEFVGANATPVLTLAQIETAIA--NVGVKRVTTTTRA--V 144

Query: 136 RSAGGTARPTTAAARAREAVDGEKYAYFKANRHMLPDEINQHSDEISKLMLNGMSAEQAF 195
           RS  G++ P   AAR  + +D +KY YFK N   LP+ I  +S +I+ LM  GM+AE AF
Sbjct: 145 RSVRGSSTP---AARPGDLIDIQKYEYFKNNVQKLPEGIRAYSQDITNLMKKGMTAEAAF 201

Query: 196 GEVISKYF 203
           GE++ +YF
Sbjct: 202 GEIVEQYF 209


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.129    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 341,956
Number of extensions: 10429
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 125
Effective length of database: 928,958
Effective search space: 116119750
Effective search space used: 116119750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)