BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3698.p (318 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981120|ref|YP_001354038.1| transcriptional regulator [Jant... 222 2e-59 gi|152982990|ref|YP_001354510.1| AraC family transcriptional reg... 211 5e-56 gi|152981075|ref|YP_001354771.1| AraC family transcriptional reg... 205 3e-54 gi|152981032|ref|YP_001351912.1| AraC family transcriptional reg... 189 3e-49 gi|152981191|ref|YP_001354772.1| AraC family transcriptional reg... 183 1e-47 >gi|152981120|ref|YP_001354038.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 321 Score = 222 bits (565), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 133/314 (42%), Positives = 186/314 (59%), Gaps = 13/314 (4%) Query: 7 AFLIFADCSMLDFTGPLSAF-DAANRVSGQALYRLTLYSEAGGMIRSSAGALIQ---TER 62 A L F +LD GP F +AA +++ YR+ + G +SS+G + T + Sbjct: 6 AVLAFPGVQLLDIAGPADVFMEAARQLNDARAYRVQIIGTESGPFKSSSGLYVTPDATLQ 65 Query: 63 IGRASFDTLVVAGGGAPREGLVSPALRR--YIVRAAARSRRIAGVCTGAFVLAAAGVLDG 120 R DTL+VAG +P +++ R ++ + A RRI VCTGA +L AG+L+G Sbjct: 66 TFRGGIDTLMVAG--SPDTDVITENSTRDAWLKKRAKSVRRIGSVCTGALILGMAGLLEG 123 Query: 121 RHATTHWRMAAKLQQMHPQVKVDSDRIYSRDGKVWTSAGISAGIDLALALIEEDHGVELA 180 + TTHW A KL M PQ +VD D IY RDG ++TSAG++AG+DLALA++EEDHG ELA Sbjct: 124 KRITTHWSSAEKLATMFPQTEVDPDCIYLRDGNLYTSAGVTAGMDLALAMVEEDHGRELA 183 Query: 181 RSVARELVVYHRRPGGQSQFS---ALQEMDGGSERIRRALGFAREHLQHELTVDLLAEVA 237 VARE+V++ +RPGGQSQFS A Q +G + I + + +L+ +L+V LAE A Sbjct: 184 LKVAREMVMFVKRPGGQSQFSSHLAAQHTEGST--IGQIQAYVLANLRADLSVPQLAERA 241 Query: 238 CLSRRQFDRTFAAETGQTPARAIEQMRAEAARLRIEQSQDSLESIARATGFGDADRMRRA 297 +S R F RTF AE+G TPA +E R + AR IE+ L+ IA+ GF + D MR+A Sbjct: 242 RMSERSFARTFKAESGSTPASFVEAARLDQARRLIEEQSQPLKRIAQLCGFSNLDAMRKA 301 Query: 298 CLRLFGQPPQAMRR 311 +R P RR Sbjct: 302 FMRRISIGPAEYRR 315 >gi|152982990|ref|YP_001354510.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 332 Score = 211 bits (537), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 121/311 (38%), Positives = 176/311 (56%), Gaps = 8/311 (2%) Query: 8 FLIFADCSMLDFTGPLSAFDAANR----VSGQALYRLTLYSEAGGMIRS-SAGALIQTER 62 +++ L+ GP+ FD N+ + Y++ + S GM+ S + +L + Sbjct: 15 IIVYPGFKALEAIGPMKVFDYTNKHLRKLGLAGGYQVNIVSNKVGMVASDTLMSLYAGKA 74 Query: 63 IGRASFDTLVVAGGGAPREGLV--SPALRRYIVRAAARSRRIAGVCTGAFVLAAAGVLDG 120 I + L + G E + SP + +I A+R R+A +CTG+F LAAAGVL+G Sbjct: 75 ISAWTLPDLALIVGSPDIEDALEESPEIVDWITSVASRIGRLAALCTGSFFLAAAGVLNG 134 Query: 121 RHATTHWRMAAKLQQMHPQVKVDSDRIYSRDGKVWTSAGISAGIDLALALIEEDHGVELA 180 R +THW +L+ M+P+V VD+D I+ R+G +WTSAG++A +DL LAL+EED G E+A Sbjct: 135 RRVSTHWGFVERLRNMYPEVIVDADAIFIREGNIWTSAGVTAAMDLTLALVEEDFGREVA 194 Query: 181 RSVARELVVYHRRPGGQSQFSA-LQEMDGGSERIRRALGFAREHLQHELTVDLLAEVACL 239 VAR+LV+Y +RPGGQSQFS L IR + HL+ ELTV LA+ + Sbjct: 195 LEVARDLVIYLKRPGGQSQFSVHLSSQMNTHPTIRELQNWIMSHLEGELTVPRLAQRMAM 254 Query: 240 SRRQFDRTFAAETGQTPARAIEQMRAEAARLRIEQSQDSLESIARATGFGDADRMRRACL 299 S R F R F E G++PA IE+ R EAAR +E + L+ I TGFG ++MRR Sbjct: 255 SERNFARVFHREAGESPADFIERARFEAARRMLEGDKLPLKLIVGKTGFGTEEKMRRVFK 314 Query: 300 RLFGQPPQAMR 310 + G P+ R Sbjct: 315 KKVGLTPKTYR 325 >gi|152981075|ref|YP_001354771.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 322 Score = 205 bits (522), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 120/308 (38%), Positives = 175/308 (56%), Gaps = 7/308 (2%) Query: 1 MPARDTAFLIFADCSMLDFTGPLSAFDAANRVSG-QALYRLTLYSEAGGMIRSSAGALIQ 59 MP A L+F LD +GPL F ANR G + Y+LT+ G+++ S G I Sbjct: 1 MPT--VAILVFPGAQALDVSGPLDVFSEANRFLGHEQRYQLTVIGSTHGLMQCSNGLPIA 58 Query: 60 TERIGR---ASFDTLVVAGGGAPREGLVSPALRRYIVRAAARSRRIAGVCTGAFVLAAAG 116 + FD ++VAGG + AL ++ A RS + +C GAF+LA AG Sbjct: 59 AHKHYSEVDTGFDLILVAGGPELPQQARDEALLGWLHSCALRSGKYGSICNGAFLLAHAG 118 Query: 117 VLDGRHATTHWRMAAKLQQMHPQVKVDSDRIYSRDGKVWTSAGISAGIDLALALIEEDHG 176 +L+G+ TTHW AA L +M P VD+DRI+ +DG ++TSAG++AGIDL+L L+ ++ G Sbjct: 119 LLNGKTITTHWNDAALLARMFPATTVDADRIFLQDGNLYTSAGVTAGIDLSLYLLSQESG 178 Query: 177 VELARSVARELVVYHRRPGGQSQFSA-LQEMDGGSERIRRALGFAREHLQHELTVDLLAE 235 E++ +VA+ LVV+ +R GGQSQFS L S + + +LQ EL+V++LA Sbjct: 179 AEVSLNVAKRLVVFMQRRGGQSQFSPYLTPYAEESSPVSMVQQYVLANLQQELSVEILAR 238 Query: 236 VACLSRRQFDRTFAAETGQTPARAIEQMRAEAARLRIEQSQDSLESIARATGFGDADRMR 295 +S R F R F +T TPA IE R +AAR +E S D ++ IA GF +A++MR Sbjct: 239 TVAMSPRNFARIFVRDTKITPAEFIESARLDAARALLEASNDPMKKIAYLCGFHNANQMR 298 Query: 296 RACLRLFG 303 ++ G Sbjct: 299 NVFVKRLG 306 >gi|152981032|ref|YP_001351912.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 345 Score = 189 bits (479), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 115/315 (36%), Positives = 166/315 (52%), Gaps = 8/315 (2%) Query: 4 RDTAFLIFADCSMLDFTGPLSAFDAAN----RVSGQALYRLTLYSEAGGMIRSSAGALIQ 59 R +I+ L+ GPLS F+ AN R Y + S G ++S ++ Sbjct: 10 RTVDIIIYPGFKALEAIGPLSVFEYANLHLQRQRKGNGYDVRFVSTGVGPVQSDTQMVLH 69 Query: 60 TER-IGRASFDTLVVAGGGAPREGLVSPA--LRRYIVRAAARSRRIAGVCTGAFVLAAAG 116 + + + + G +G + A + +IV + R+A +C+GAF LA+AG Sbjct: 70 AAKAVSNLALPDDAIIVGARNIQGALENAGPIVDWIVAVHPQINRLAALCSGAFFLASAG 129 Query: 117 VLDGRHATTHWRMAAKLQQMHPQVKVDSDRIYSRDGKVWTSAGISAGIDLALALIEEDHG 176 VL+G+ ATTHW +A LQ+ P ++VD++ I+ R G +WTSAG++AGIDLALA +EED G Sbjct: 130 VLEGKRATTHWSVAQMLQEQFPAIEVDANAIFVRSGNLWTSAGVTAGIDLALAFVEEDFG 189 Query: 177 VELARSVARELVVYHRRPGGQSQFSA-LQEMDGGSERIRRALGFAREHLQHELTVDLLAE 235 ELA VA ++VVY +RPGGQSQFS L IR + E+L L+ LA+ Sbjct: 190 RELALDVATDMVVYLKRPGGQSQFSTHLLSQKTARPNIREVQNWILENLDQRLSSTTLAQ 249 Query: 236 VACLSRRQFDRTFAAETGQTPARAIEQMRAEAARLRIEQSQDSLESIARATGFGDADRMR 295 A +S R F R F E GQ+ IE R E A+ + ++ IA +GF D D MR Sbjct: 250 KAMMSVRNFARVFQQEVGQSSQEFIEASRLELAKQLLADVALPIKKIAALSGFTDDDHMR 309 Query: 296 RACLRLFGQPPQAMR 310 R + G P+ R Sbjct: 310 RVFQKRLGITPKVYR 324 >gi|152981191|ref|YP_001354772.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 328 Score = 183 bits (465), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 115/315 (36%), Positives = 166/315 (52%), Gaps = 5/315 (1%) Query: 8 FLIFADCSMLDFTGPLSAFDAANRVS-GQALYRLTLYSEAGGMIRSSAGALIQTERI--- 63 ++F MLD P AF +S G+ Y + + G I+SS+G I +R Sbjct: 8 LVVFPRFQMLDIAAPGDAFAEVKVLSNGECEYEILTIATTRGPIQSSSGLTIMPDRTIFD 67 Query: 64 GRASFDTLVVAGGGAPREGLVSPALRRYIVRAAARSRRIAGVCTGAFVLAAAGVLDGRHA 123 FDTL+V GG + L L ++ RRI +C G F L AAG+++G+ Sbjct: 68 PCPHFDTLIVPGGLGVFDILEDTTLTDWLAAQGEGCRRIGAICNGVFALGAAGMINGKTV 127 Query: 124 TTHWRMAAKLQQMHPQVKVDSDRIYSRDGKVWTSAGISAGIDLALALIEEDHGVELARSV 183 TTHW AA+L M + V+ DRIY +D ++T+AG++AGIDL+LALIEED G ++A V Sbjct: 128 TTHWMDAARLASMFRKATVEPDRIYVKDDSLYTTAGVTAGIDLSLALIEEDFGKQMALDV 187 Query: 184 ARELVVYHRRPGGQSQFSALQEMDGGSERIRRAL-GFAREHLQHELTVDLLAEVACLSRR 242 A+ L+VY RR GGQSQFS L E+ ++ A+ + +L E T+ +A+ +S R Sbjct: 188 AKYLIVYLRRAGGQSQFSPLLEVQVKNDSPVAAVQNYVLNNLNVEHTLLSIADEMQMSAR 247 Query: 243 QFDRTFAAETGQTPARAIEQMRAEAARLRIEQSQDSLESIARATGFGDADRMRRACLRLF 302 R F ETG T + R +AAR +E + L IAR G +A +RR + Sbjct: 248 NLSRIFKQETGLTLMNFVNDARIDAARRYLESTDLGLTDIARRCGLTNAATLRRIFSKRL 307 Query: 303 GQPPQAMRRLARLDE 317 G P R+ R +E Sbjct: 308 GIGPSDYRQRFRTEE 322 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 709,365 Number of extensions: 28004 Number of successful extensions: 114 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 102 Number of HSP's successfully gapped: 9 Length of query: 318 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 235 Effective length of database: 914,170 Effective search space: 214829950 Effective search space used: 214829950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)