BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3696.p (203 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983069|ref|YP_001352708.1| TetR family transcriptional reg... 64 7e-12 gi|152982094|ref|YP_001352801.1| TetR family transcriptional reg... 58 4e-10 gi|152979947|ref|YP_001353253.1| TetR family transcriptional reg... 57 9e-10 gi|152982082|ref|YP_001353556.1| TetR family transcriptional reg... 55 3e-09 >gi|152983069|ref|YP_001352708.1| TetR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 191 Score = 63.9 bits (154), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 8/174 (4%) Query: 12 ILQAGRALIAQKGFSGVGLSEILAAADIPKGSFYHYFGSKEQYGRELIEHYVAGYLDRLA 71 +L GR ++ GF G+ EI AA IPKGSFY YF SK+ + E++E Y ++ L Sbjct: 13 LLSHGREVVHMNGFHACGVQEITNAAGIPKGSFYSYFASKDAFAVEILEAYWT-EIETLQ 71 Query: 72 DVLEARHGGNARERLLTYWGYWLESQCCQQVEQRCLVVKLSAEVADLSEDMRQALHEGTQ 131 AR + L +++ + CL+ LS E+ S +R L + + Sbjct: 72 SA--ARTSRDPATTLRSHFRALSNFHESNGFVRGCLIGNLSLELGGTSGAVRSQLQDIFR 129 Query: 132 RFIERIAVCIEEGIAEG-SLHTVLQPLATATMLYQQWLGASLLARLSRDRAPME 184 R+ E IEE +A L + + A + + GA + A++ +DRAP + Sbjct: 130 RWQE----TIEEHVALALPLRSSNECRKIAAAMLDAYEGAVMRAKVDQDRAPFD 179 >gi|152982094|ref|YP_001352801.1| TetR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 187 Score = 58.2 bits (139), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 17/179 (9%) Query: 2 REHYGQNKRNILQAGRALIAQKGFSGVGLSEILAAADIPKGSFYHYFGSKEQYGRELIEH 61 +E +N++ +L A L ++GF GV ++EI+ AA + G+FY +F SK+ + H Sbjct: 5 KEQVAENRQAVLDAAATLFRERGFEGVTVAEIMKAAGLTHGAFYGHFASKDDLITQTCTH 64 Query: 62 YVAGYLDRLADVLEARHGGNARERLLTYWGYWLESQCCQQVEQRCLVVKLSAEVADLSED 121 +A L A + ++ + Y+L + Q CL L E S+ Sbjct: 65 ALAPDLAEDAPTVG----------MMDFAEYYLSAGHRDDPGQGCLFPSLGTEAVRASDA 114 Query: 122 MRQALHEGTQRFIERIAVCIEEGIAEGSLHTVLQPLATATMLYQQWLGASLLARLSRDR 180 R L E +R I+ + + T ++ A + +GA +L+RL D+ Sbjct: 115 TRHTLTESIRRRIDNFSQTT-------AGKTAVERRQAAAGGWAAMVGAVMLSRLVDDK 166 >gi|152979947|ref|YP_001353253.1| TetR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 211 Score = 57.0 bits (136), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 64/158 (40%), Gaps = 4/158 (2%) Query: 24 GFSGVGLSEILAAADIPKGSFYHYFGSKEQYGRELIEHYVAGYLDRLADVL-EARHGGNA 82 G+ LSE+ +A I S Y FG KEQ E +E Y D L + EA +A Sbjct: 38 GYEAASLSELTSAMGITPPSLYAAFGDKEQLFLEAVERYSTKSCDALQCLFAEAPTARDA 97 Query: 83 RERLLTYWGYWLESQCCQQVEQRCLVVKLSAEVADLSEDMRQALHEGTQRFIERIAVCIE 142 ERLL C CLVV + + +E ++ A+ E I IE Sbjct: 98 IERLLQSSAV---DNTCPSHPPGCLVVTAATNCSASAEHVQTAMTERRDNVETMIKTRIE 154 Query: 143 EGIAEGSLHTVLQPLATATMLYQQWLGASLLARLSRDR 180 +G+ EG L P A+ G S AR + DR Sbjct: 155 QGVKEGELPAGTDPGTLASFYATVIQGMSTQARDTGDR 192 >gi|152982082|ref|YP_001353556.1| TetR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 197 Score = 55.1 bits (131), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 10/142 (7%) Query: 2 REHYGQNKRNILQAGRALIAQKGFSGVGLSEILAAADIPKGSFYHYFGSKEQYGRELIEH 61 +E N+ I QA L +KGF+GV +++++AAA + G FY +F SK+ EL Sbjct: 6 KEQTDLNRTAIEQASSKLFREKGFNGVSVADLMAAAGLTHGGFYGHFSSKD----ELAAV 61 Query: 62 YVAGYLDRLADVLEARHGGNARERLLTYW---GYWLESQCCQQVEQRCLVVKLSAEVA-- 116 A ++ + R G E+ Y GY L SQ + V C L+ +VA Sbjct: 62 ACATAFSEASERWQKRMEGKPDEQQALYAIIDGY-LSSQKVRDVGNGCPGAALTTDVARE 120 Query: 117 DLSEDMRQALHEGTQRFIERIA 138 L + +R A GT+ +E +A Sbjct: 121 ALDKPVRAAYMAGTEELVEILA 142 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 465,083 Number of extensions: 17569 Number of successful extensions: 71 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 70 Number of HSP's successfully gapped: 4 Length of query: 203 Length of database: 1,221,021 Length adjustment: 79 Effective length of query: 124 Effective length of database: 928,958 Effective search space: 115190792 Effective search space used: 115190792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)