BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3694.p
         (336 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981498|ref|YP_001355370.1| flavin dependant oxidoreductase...   389   e-109

>gi|152981498|ref|YP_001355370.1| flavin dependant oxidoreductase
           [Janthinobacterium sp. Marseille]
          Length = 333

 Score =  389 bits (1000), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/324 (58%), Positives = 244/324 (75%), Gaps = 1/324 (0%)

Query: 2   IPFSVLDLSPINQGSSAAQAFQNSKELAQRAEALGYRRYWLAEHHNMPGIASAATALVIS 61
           IP SVLDLSPI    + A AF  S +LAQ  E  GY RYWLAEHH+MPGIASAAT++VI 
Sbjct: 7   IPLSVLDLSPILVDGTPADAFHRSLDLAQHVEKRGYNRYWLAEHHSMPGIASAATSVVIG 66

Query: 62  HIAAHTRTIRVGSGGIMLPNHSPLVIAEQFGTLESLYPGRIDLGLGRAPGSDQRTARALR 121
           ++A  T TIRVGSGGIMLPNH+PLVIAEQFGTL SLYPGRIDLGLGRAPGS+Q TARALR
Sbjct: 67  YVAGGTSTIRVGSGGIMLPNHAPLVIAEQFGTLASLYPGRIDLGLGRAPGSNQATARALR 126

Query: 122 RHMGGDTADNFPQDVLELQQYFDEPSDYQALRAVPGAGLKVPLWLLGSSMFSAQLAAELG 181
           R +  D ++ FP+ + EL+ +    ++  A++AVPGAG+ +P+WLLGSS +SAQLA  LG
Sbjct: 127 REISDDGSE-FPRQLNELRAFLQPSNESAAVQAVPGAGIDIPIWLLGSSSYSAQLAGHLG 185

Query: 182 LPFAFASHFAPGFMKSAVQIYRERFKPSANLKKPYVMLALNVFAADTQRQAERLFTSLQQ 241
           LPFAFA  F+P +M +A+ +YR+ F+PS  L  PY M+ +NVFAA+T+ +A+RL TS QQ
Sbjct: 186 LPFAFAGQFSPDYMLNALHLYRQTFRPSETLDAPYAMVGVNVFAAETEEEAQRLATSQQQ 245

Query: 242 QFLNLIRGTPGQLRPPVEDIDALWQPGEQAHVERSLACAVVGDRETVQEGLQAFIDEHAP 301
             L+L+RGTPG+L PP+E++D  W P E+  VE  L  +++GD   V+E L+AF++    
Sbjct: 246 MHLSLVRGTPGKLPPPIENMDDAWLPHERISVESMLRASIIGDAAIVKEKLEAFLETTQA 305

Query: 302 DELIITAQIFDHAARLHSFEIAAE 325
           DE+II + IFDHA R+ S+EI A+
Sbjct: 306 DEIIINSMIFDHAKRVRSYEIVAD 329


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 797,363
Number of extensions: 33053
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 252
Effective length of database: 910,473
Effective search space: 229439196
Effective search space used: 229439196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)