BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3692.p (738 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982088|ref|YP_001354597.1| hypothetical protein mma_2907 [... 675 0.0 gi|152981463|ref|YP_001352343.1| signal transduction protein [Ja... 154 2e-38 gi|152981019|ref|YP_001354994.1| sensory box/GGDEF family protei... 144 2e-35 gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinoba... 141 1e-34 gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [... 141 2e-34 >gi|152982088|ref|YP_001354597.1| hypothetical protein mma_2907 [Janthinobacterium sp. Marseille] Length = 719 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/705 (49%), Positives = 490/705 (69%), Gaps = 7/705 (0%) Query: 27 KAPSPPNLSSLITLGVVITVLITTVSVLLLVDQFTRGYARSESETRMKQLAWQMQDALER 86 K P L++L+T+GV TV++T +++L+L+D F YA+ ++ R++QL+WQM+D+L+R Sbjct: 16 KTPERLRLATLVTIGVCATVIVTMLTLLVLIDHFAATYAKQQAHERLQQLSWQMRDSLDR 75 Query: 87 GMSEREIDLRQLVSR-PSIRNGHDLSLIRRILDELQASVPHYAWIGLARPDGSIMVASQG 145 GM R ID Q+++ +R+ + + +RR+ D + + P YAWIGL P G ++ AS G Sbjct: 76 GMG-RMIDHAQVIADLVPVRDAQNPAEMRRVFDNVHKNFPDYAWIGLTDPKGIVVSASGG 134 Query: 146 WLEGASVAERPWFQEGRKGPYAGDYHPAVLLSHQLPPQSNPWRFVDLSAPVHDLQGRFIG 205 LEG V++RPWFQ G + + GDYHPAVLL +LP WRFVD++ PV G + G Sbjct: 135 LLEGVDVSKRPWFQGGAQQVFIGDYHPAVLLEDKLPESEERWRFVDVALPVTRSDGSYRG 194 Query: 206 VLGMHLSWSWARDIAGKLLAPTSNRYDVEVIIVRSDGTVILGPKSMEESKIDTASWRASL 265 VLG+HLSW+WAR IA LL P +Y VEVI+VR+DG V+LGP +EES I T S + Sbjct: 195 VLGIHLSWNWARGIANSLLVPADRQYMVEVIVVRNDGMVMLGPDYLEESTITTTSLDLAH 254 Query: 266 KATNGGSMIETWPDGQRYVSGYARTGSTGGM-KLQWSVIVRQPEVVALAAFRDLERRVIL 324 + G ++ E WPDG+RY++GY++TG+ G L+W+V++RQPE +ALA FR+L+++V+ Sbjct: 255 TGSTG-AIAEKWPDGRRYLTGYSQTGARAGHPSLKWAVLIRQPEEIALADFRELQQQVLW 313 Query: 325 VGALSCVALVILAFVLTRRLVAPINALSAALEQRAAGQAEVAIPQVNSYREIQLLSSTLV 384 VGA + L ++A L R+L P++ LSAA+ QR G AIP ++ Y E+ LLS TL Sbjct: 314 VGAALGLLLALIAVALARQLARPLDDLSAAITQRKEGTG-TAIPVIDGYHEVHLLSLTLA 372 Query: 385 NMVEREERYLSEVRSLNESLEQRVAERTSRLHETATALQQALDQQQDNQLQLEETAAELR 444 +MV RE++++ ++R+LNE+LE V ERT + + A AL+ AL QQ Q +L+E+ AELR Sbjct: 373 DMVGREQQHVGKLRALNENLEHLVQERTQEIEQKAQALEDALQQQLAIQERLQESEAELR 432 Query: 445 AILENAQDAFIAADEHGRVVEWNRQAELLLGWPRDQAMGRDMAELIIPPDLRAAHNRGMA 504 A L+NA DAFI+ D+ G +V+WN QAE LLGW +A+G+ +AELI+PP LR + R + Sbjct: 433 ATLQNANDAFISMDQDGIIVDWNEQAEHLLGWTHKEAVGQPLAELIVPPTLRDGYERDLQ 492 Query: 505 QFLKDGTSVVINNRIELQALHHDGHELPVEITVGHVKRQSGHLFIAFLHDITERLAFRDQ 564 FL G S +IN R+EL AL DG E P+E+ V V R++G+LFIAFLHDITER + Sbjct: 493 HFLLTGESNIINRRVELSALRRDGKEFPIELAVACVARRNGYLFIAFLHDITERKLLQAS 552 Query: 565 MRELALTDVLTSLPNRRAFSDRLPEGMMRARRADQLLSLFFMDIDGFKGVNDRYGHEAGD 624 + +AL D LT LPNRRA RLPE + RA R + L++ F+D+DGFKGVND YGHEAGD Sbjct: 553 LMGMALKDPLTDLPNRRALIQRLPESIARAARLGKPLAVLFLDLDGFKGVNDGYGHEAGD 612 Query: 625 ELLVEFARRLQRSVRDVDTVARLAGDEFVVILENLQSQEDAVMVAEKILATIREPFELTH 684 ELL A+RL +VR DTVARLAGDEFV++LE L DA+ VA+KIL T+++PF LT Sbjct: 613 ELLRTIAQRLLGAVRTTDTVARLAGDEFVIVLEMLNGDSDAMDVADKILHTLQQPFTLTA 672 Query: 685 STVHISSSIGVAVYQPNLDGEVGPEELLSMADKAMYTAKRLGKNR 729 +TV IS+SIG+A++ P + PE+L+++AD AMY AK+ GKNR Sbjct: 673 ATVTISASIGIAMHWP--EDHTTPEQLITLADGAMYAAKKKGKNR 715 >gi|152981463|ref|YP_001352343.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 457 Score = 154 bits (388), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 83/186 (44%), Positives = 121/186 (65%), Gaps = 5/186 (2%) Query: 545 GHLFIAFL-HDITERLAFRDQMRELALTDVLTSLPNRRAFSDRLPEGMMRARRADQLLSL 603 G LF+A+L + + + R +++ LA DVLT LPNRR RL + + A L+++ Sbjct: 271 GSLFVAWLAYLLGGVIRSRKELQRLAQYDVLTGLPNRRLLDSRLKKAIAGANGHHHLVAV 330 Query: 604 FFMDIDGFKGVNDRYGHEAGDELLVEFARRLQRSVRDVDTVARLAGDEFVVILENLQSQE 663 F+D+DGFK VND GH AGD LL + A+RLQ +R DT+AR GDEFVVIL+ L S + Sbjct: 331 CFLDLDGFKEVNDSLGHAAGDRLLQQMAQRLQHCMRATDTLARFGGDEFVVILDRLNSID 390 Query: 664 DAVMVAEKILATIREPFELTHSTVHISSSIGVAVYQPNLDGEVGPEELLSMADKAMYTAK 723 + + E+++ T +EP + + V +S+SIGVA++QP ++ E+LL AD AMY AK Sbjct: 391 ECEKILERMIHTAQEPVHMDGNEVIVSASIGVAMFQPGVE----REQLLKRADTAMYQAK 446 Query: 724 RLGKNR 729 +LGKN+ Sbjct: 447 QLGKNK 452 >gi|152981019|ref|YP_001354994.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 563 Score = 144 bits (363), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 99/297 (33%), Positives = 162/297 (54%), Gaps = 26/297 (8%) Query: 442 ELRAILENAQDAFIAADEHGRVVEWNRQAELLLGWPRDQAMGRDMAELIIPPD---LRAA 498 +L +++E A + + + G ++ +++ + L+G A G + EL+ D + AA Sbjct: 12 QLSSLMEIAGELVLRLNTRGEILHVSKRTDALIGHGSSLA-GMKLFELVRLSDRHAIEAA 70 Query: 499 HNRGMAQFLKDGTSVVINNR-----IELQALHHDGHELPVEITVGHVKRQSGHLFIAFLH 553 + +A SV + R ELQ + +D + + VGH Sbjct: 71 LRQAVASREVTRVSVQMATRAVLRWYELQMIAYDDADEAAVLVVGH-------------- 116 Query: 554 DITERLAFRDQMRELALTDVLTSLPNRRAFSDRLPEGMMRARRADQLLSLFFMDIDGFKG 613 DI+ + A +++R +A D LT LPNR +DRL + ++RR D+ ++ +D+DGFK Sbjct: 117 DISGQQATEERLRHMATHDELTGLPNRSLLADRLRMAIAQSRRTDRGFAVVALDLDGFKK 176 Query: 614 VNDRYGHEAGDELLVEFARRLQRSVRDVDTVARLAGDEFVVILENLQSQEDAVMVAEKIL 673 VND GH GD LL A RL+ ++RDVDT+AR+ GDEFV +L + + VA +++ Sbjct: 177 VNDALGHPVGDALLRVAAARLRETLRDVDTLARVGGDEFVAVLHGAVDEVEIHNVARRMI 236 Query: 674 ATIREPFELTHSTVHISSSIGVAVYQPNLDGEVGPEELLSMADKAMYTAKRLGKNRV 730 A I+ PFE+ + +++S+SIGVA+Y + + +V +LL+ AD AMY AK GK R Sbjct: 237 AAIQLPFEIDGNALYVSTSIGVAIYPAHGETDV---KLLAHADSAMYRAKETGKARC 290 >gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinobacterium sp. Marseille] Length = 914 Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 74/181 (40%), Positives = 110/181 (60%), Gaps = 3/181 (1%) Query: 552 LHDITERLAFRDQMRELALTDVLTSLPNRRAFSDRLPEGMMRARRADQLLSLFFMDIDGF 611 D+++R A +++ LA D LT+LPNR + LP+ + A L++ F+D+D F Sbjct: 465 FRDVSDRKAHEEELHRLATKDTLTNLPNRYWLMNHLPKALNEANEKQDSLAVLFIDLDDF 524 Query: 612 KGVNDRYGHEAGDELLVEFARRLQRSVRDVDTVARLAGDEFVVILENLQSQEDAVMVAEK 671 K +ND GH +GD LL A RL+ +R D+V RL GDEF ++LE+L QED ++A + Sbjct: 525 KNINDTLGHSSGDSLLQVVASRLESVLRPGDSVVRLGGDEFTLLLESLPLQEDISLIANR 584 Query: 672 ILATIREPFELTHSTVHISSSIGVAVYQPNLDGEVGPEELLSMADKAMYTAKRLGKNRVE 731 I+ T +PFE+ + IS+S+G++ Y DG E LL AD AMY+AK GKN+V Sbjct: 585 IMQTFNQPFEIQQKMLTISASMGISRYP--FDGR-DAETLLKNADIAMYSAKADGKNKVR 641 Query: 732 L 732 + Sbjct: 642 V 642 >gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille] Length = 956 Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 117/345 (33%), Positives = 169/345 (48%), Gaps = 39/345 (11%) Query: 395 SEVRSLNESLEQRVAERTSRLHETATALQQALDQQQDNQLQLEETAAELRA---ILENAQ 451 +++R++N+ L +A R HE LQL E A E A I+ A Sbjct: 367 AQLRTVNDDLIADIAARKHAEHE----------------LQLRERAIEASANAIIIARA- 409 Query: 452 DAFIAADEHGRVVEWNRQAELLLGWPRDQAMGRDMAELIIP----PDLRAAHNRGMAQFL 507 +A D V N + G+ ++A+GR++ L P + R +A Sbjct: 410 ---VAPDYPLEYV--NPAFTRITGYSPEEALGRNIGFLWGKDWEQPGIEEL--RSIALEK 462 Query: 508 KDGTSVVINNRIELQALHHDGHELPVEITVGHVKRQSGHLFIAFLHDITERLAFRDQMRE 567 ++G +V+ N R + D + PV+ G V F+ L+DIT + ++ Sbjct: 463 REGHAVLRNYRKDGALFWSDLYIAPVKDDTGEVSH-----FVVALYDITATKRYESELEF 517 Query: 568 LALTDVLTSLPNRRAFSDRLPEGMMRARRADQLLSLFFMDIDGFKGVNDRYGHEAGDELL 627 D LT L NR DRL + + A R + + + F+D+D FK VND GH+AGD LL Sbjct: 518 QTNRDALTGLANRSLLRDRLSQAISYAHRYNHPIWIAFVDLDRFKFVNDTLGHQAGDLLL 577 Query: 628 VEFARRLQRSVRDVDTVARLAGDEFVVILENLQSQEDAVMVAEKILATIREPFELTHSTV 687 A RLQ +VRD DTV+R+ GDEFV+IL + + ++I+ I +P + Sbjct: 578 KAIAERLQHAVRDTDTVSRMGGDEFVLILPERVDAGLSTGIVQRIMDGIAQPLTIEGHEF 637 Query: 688 HISSSIGVAVYQPNLDGEVGPEELLSMADKAMYTAKRLGKNRVEL 732 ISSSIGVAVY PN DG V PEEL+ AD AMY AK G+N + Sbjct: 638 FISSSIGVAVY-PN-DG-VTPEELIKHADIAMYRAKETGRNNFQF 679 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,603,523 Number of extensions: 65517 Number of successful extensions: 294 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 257 Number of HSP's successfully gapped: 31 Length of query: 738 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 648 Effective length of database: 888,291 Effective search space: 575612568 Effective search space used: 575612568 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)