BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3688.p (940 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981014|ref|YP_001353510.1| two-component regulatory protei... 865 0.0 gi|152981455|ref|YP_001351905.1| two-component sensor histidine ... 95 2e-20 gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Jant... 95 2e-20 gi|152982481|ref|YP_001353348.1| signal transduction histidine k... 91 2e-19 gi|152982458|ref|YP_001353582.1| sensor histidine kinase/respons... 90 5e-19 >gi|152981014|ref|YP_001353510.1| two-component regulatory protein sensor kinase for high-affinity potassium transport system [Janthinobacterium sp. Marseille] Length = 908 Score = 865 bits (2235), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/920 (50%), Positives = 619/920 (67%), Gaps = 32/920 (3%) Query: 24 NTRPDPDDLLERVMRDEERQARGRLKIFFGFSAGVGKTFAMLEAAQALGAQGVDVLAGVV 83 + RPDPD LL ++ + R +RG+L+I+FG SAGVGKT+AML AA+++ + +DV+ G+V Sbjct: 6 HQRPDPDTLLAQMQAQDRRASRGKLRIYFGASAGVGKTYAMLNAARSMQGEKLDVVVGLV 65 Query: 84 ETHGRAETEAQLAGIVRLPMRLVPYRNRQLPEFDLDAALERKPGVILVDELAHSNVPGSR 143 ETHGR ET A L G+ LP + V YR++ + EFD+DAAL RKP +ILVDELAHSN PGSR Sbjct: 66 ETHGRKETAALLDGLEILPRKDVAYRDKIIAEFDIDAALARKPALILVDELAHSNAPGSR 125 Query: 144 HAKRWQDIDELLRAGIDVYTTLNVQHIESLNDVVGQITGIRVFETVPDHVFDEADDVMLV 203 H KRWQD++ELL AGIDV+T +NVQH+ESLNDV+G ITGIRV ET+PD VFD+AD+++LV Sbjct: 126 HPKRWQDVEELLGAGIDVFTAVNVQHLESLNDVIGGITGIRVAETLPDTVFDQADEIVLV 185 Query: 204 DIPPDELLTRLQQGKVYLPQQAEKAGRNFFRKGNLIALREIALRRTADRVDADMRQYRAD 263 DIP D+LLTRL++GKVY PQQAE+A RNFFRKGNLIALRE+ALRRTADRV+ D++ YR + Sbjct: 186 DIPADDLLTRLKEGKVYQPQQAERASRNFFRKGNLIALRELALRRTADRVEDDVQAYRVE 245 Query: 264 RSIAQLWQARERIVVAVGSGAGEERLIREGARLAAKLQAEWLAVHVDLPR-QRQSMNERE 322 +SI +W+ ++ +G AG E +IR A+LA +L A+W AV+V+ P+ QR S ERE Sbjct: 246 KSINAIWKTDSDLLACIGPRAGAEHVIRSTAQLAGQLNAQWHAVYVETPQLQRLSPTERE 305 Query: 323 RVVAYLKLAQSLGAETASISGEQLSAALLQFARSRNAGKLVIGQEEGGLRRLLRWP-RGS 381 R++ LKLAQ LGA TA + G ++ ++ +ARS N ++++G+ RWP R Sbjct: 306 RILKTLKLAQDLGATTAVLPGNDIAREIVNYARSHNFSRIILGRNHS------RWPWRAP 359 Query: 382 LSQRIASAGGEIDLYTIARSRTREHQEERSMDSAASA-AEALLTRRRRTRGSLWAVASCA 440 +QRIA+ +IDL ++RE + ++ EA+ + + W VA C Sbjct: 360 HAQRIANYAPDIDLIETGERQSREAAVAAPREGGSTQDDEAVDSGKSPYMPYAWTVAICI 419 Query: 441 ATTTLAFVLDGKLHPANVIMLYLVGVMLVAMRYGRAASILVSVLSVLSFDFFFVDPRFSI 500 T + + L AN++ML+L+ +L+A+R+GR ++L + LSV FDFFFV PRFS Sbjct: 420 LTALITTPMMPHLDLANIVMLFLLAEVLIAVRFGRGPAVLAAFLSVAVFDFFFVSPRFSF 479 Query: 501 SVSDAQYLLTLAVMLAVSLFISSLTARLRRQASVAMQREARAANLYMLGKELSALLTLDQ 560 +VSD QYL+T +V+L V L + LT+ LR QA +A QRE RA LY +ELS+ L +Q Sbjct: 480 AVSDVQYLVTFSVLLVVGLIVGQLTSGLRFQARIAAQREGRARALYEFARELSSALQAEQ 539 Query: 561 ILEIGRRHLAAVFGARIAFFLPDSAEQLRLAEPQADSGGAHVLRSVDAGVAQWVYDNGQP 620 + E + + F A+ LP+ +L+ A+ + + +D G+AQW +D P Sbjct: 540 VFETTQNFIQRTFRAQAVLLLPNDEARLQAAQGHS--------KELDIGIAQWAFDRATP 591 Query: 621 AGKGTATLPSAAALYLPLMATMRTRGVLAFAIEAPSEEERQLAAAQLALPENRQMLEIFC 680 AG GT TLP++A YLPL+A MRTRGVLA E R+ + +PE R+ L+ F Sbjct: 592 AGMGTDTLPASAYFYLPLVAPMRTRGVLAI-----KPENRRW----MLIPEQRRQLDTFA 642 Query: 681 SQIAMAIERLHYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTSLVGSAEVLA-GDAR 739 + A+A+ER+HY EVAQDAL+ MESERLRNSLL+AISHDLRTPLT+LVG +E L Sbjct: 643 ALAAIALERVHYIEVAQDALLRMESERLRNSLLAAISHDLRTPLTALVGLSESLTRSKPE 702 Query: 740 LDDDARAMARTISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALEELTGSALRLLAKA 799 L + +A + E++ +M L+ NLLDMAR+Q+G V LN QW EE+ GS+LR + Sbjct: 703 LAAAQQELAHALHEEALRMGNLVTNLLDMARIQSGEVKLNLQWQQFEEVVGSSLRAVQSL 762 Query: 800 LEGRLVETRIAPDLPLLRVDAVLLERVLANLVENAIKYSPPGSSITIAAHVEDIDDAPQV 859 L V TR+AP LPL+ DAVL+ERVL NL+ENA KY+P GS ITIAA + + Sbjct: 763 LGRHQVHTRLAPGLPLVNFDAVLIERVLCNLLENASKYTPAGSQITIAAEL----SGQYL 818 Query: 860 KVSVIDHGRGFPPAMTQHAFEKFTRGDNESATPGVGLGLAICRAIIEAHQGRIWIAPQEA 919 V+V D+G G PP + FEKFTRG+ ESATPGVGLGLAICRAIIEAH G I Sbjct: 819 DVAVYDNGPGLPPGQEEAIFEKFTRGERESATPGVGLGLAICRAIIEAHHGTIRGGHSPQ 878 Query: 920 GQGATVCFTLPVEAQPALPE 939 G GA + FTLP+ PA+P+ Sbjct: 879 G-GAAIIFTLPLGTPPAMPD 897 >gi|152981455|ref|YP_001351905.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 788 Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 113/231 (48%), Gaps = 8/231 (3%) Query: 705 SERLRNSLLSAISHDLRTPLTSLVGSAEVLAGDARLDDDARAMARTISEQSQKMVGLMNN 764 +ER R+ L +SHD+R P S++ E+ + + A +R I + S+K +GL +N Sbjct: 558 AERSRDETLRFLSHDMRAPQASILALLELQSETSSALPQAELFSR-IEKASRKTLGLADN 616 Query: 765 LLDMARLQAGVVTLNRQWNALEELTGSALRLLAKALEGR--LVETRIAPDLPLLRVDAVL 822 + +AR ++ L ++L A + + R V+ I+ ++VD L Sbjct: 617 FVQLARAESHEYRLEEV--DFQDLLFDATDEMWSLAKSRHITVQMEISDGEYPVKVDRTL 674 Query: 823 LERVLANLVENAIKYSPPGSSITIAAHVEDIDDAPQVKVSVIDHGRGFPPAMTQHAFEKF 882 + R LANL+ NAI YSP +SI + +E +V ++DHG G A F +F Sbjct: 675 MTRALANLLSNAINYSPDHTSIECSVRLEQEGPEQRVVCRILDHGYGIADADQGKLFLRF 734 Query: 883 TRGD--NESATPGVGLGLAICRAIIEAHQGRIWIAPQEAGQGATVCFTLPV 931 R D N+ GVGLGL + +IE HQG I Q AG G + LPV Sbjct: 735 QRVDLPNQPRHDGVGLGLVFVKTVIERHQGDISFISQ-AGVGTSFTLMLPV 784 >gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Janthinobacterium sp. Marseille] Length = 466 Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 112/211 (53%), Gaps = 15/211 (7%) Query: 716 ISHDLRTPLTSLVGSAEVLAGDARLDDDARAMARTISEQSQKMVGLMNNLLDMARLQAGV 775 ++HDLRTPL +L+ +V AR +D + + + E+ +++ ++ ++L +AR++ Sbjct: 254 LAHDLRTPLNNLMVQTQVALVQARSVEDYQGLLISNVEEYERLTRMVESMLFLARVEHTH 313 Query: 776 VTLNRQWNALEELTGSALRLLAKALEGRLVETRIAPDLPL---LRVDAVLLERVLANLVE 832 V LN+ +L E L+ +A EG E + + + DA+LL R + NLV Sbjct: 314 VMLNKSALSLPE----ELQRIADYFEGLADEAGVRLTVEAGGRVYADAILLRRAIGNLVA 369 Query: 833 NAIKYSPPGSSITIAAHVEDIDDAPQVKVSVIDHGRGFPPAMTQHAFEKFTRGD---NES 889 NAI Y+P G++I + + + A VSV++ G G H F +F RGD + S Sbjct: 370 NAIPYTPRGATIVL----KGVMTADGATVSVVNPGAGIAAQHIPHVFNRFYRGDAARSNS 425 Query: 890 ATPGVGLGLAICRAIIEAHQGRIWIAPQEAG 920 AT GLGLAI ++I+ H GR + +E G Sbjct: 426 AT-STGLGLAIVQSIMALHGGRATVTSEENG 455 >gi|152982481|ref|YP_001353348.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 459 Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 76/270 (28%), Positives = 130/270 (48%), Gaps = 10/270 (3%) Query: 671 ENRQMLEIFCSQIAMAIERLHYAEV-AQDALVTMESERLRNS-LLSAISHDLRTPLTSLV 728 +++ +LE Q+ A E L A AQD ES R LS ++H+LR PL + Sbjct: 57 QSKHVLEALVVQLREANEHLVLAASGAQDMQAKAESANHRQEEFLSMLAHELRNPLAPIA 116 Query: 729 GSAEVLAGDARLDDDARAMARTISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALEEL 788 +A++L + + IS Q M L+++L+D +R+ G +TL ++ L E+ Sbjct: 117 MAADLLGKISTAHPLLPKLHGIISRQVSHMAHLVDDLVDASRVSTGNITLQKRSLLLAEI 176 Query: 789 TGSALRLLAKALEGRLVETRIA-PDLPLL-RVDAVLLERVLANLVENAIKYSPPGSSITI 846 SA+ ++ R + I+ PD ++ D V L + ANL+ NA K++P I I Sbjct: 177 IESAVETSQPFIDKRTQQLTISMPDASIIIHGDLVRLAQAFANLIINATKFTPVDGHIDI 236 Query: 847 AAHVEDIDDAPQVKVSVIDHGRGFPPAMTQHAFEKFTRG--DNESATPGVGLGLAICRAI 904 ++ VKV + D G G + + FE F +G + + G+G+GL++ R + Sbjct: 237 LVQLQ----TSTVKVVIKDDGVGIAADIQPYIFELFRQGPLSLDRSQGGLGIGLSLVRTV 292 Query: 905 IEAHQGRIWIAPQEAGQGATVCFTLPVEAQ 934 +E H G + + A G+ LP+ A+ Sbjct: 293 VEMHTGTVSVYSAGADLGSEFTVELPIAAE 322 >gi|152982458|ref|YP_001353582.1| sensor histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 1096 Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 77/240 (32%), Positives = 122/240 (50%), Gaps = 16/240 (6%) Query: 709 RNSLLSAISHDLRTPLTSLVGSAEVLAGDARLDDDARAMARTISEQSQKMVGLMNNLLDM 768 + ++ ISH+LR+PL S++G +++L + +LD R +TI + ++GL++ LLD+ Sbjct: 647 KTRYVAGISHELRSPLNSILGYSQILLKNEQLDAAPRTAIQTIQRSGEHLLGLVDELLDL 706 Query: 769 ARLQAGVVTLNRQ---WNALEELTGSALRLLAKALEGRLVETRIAPDLP-LLRVDAVLLE 824 AR++A + L + A + S +R A+A RL T DLP + D L Sbjct: 707 ARIEADRMRLEPAPILFAAFIDDLLSMVRPQAEAKGLRLQYTH-GGDLPHYVLADGKRLR 765 Query: 825 RVLANLVENAIKYSPPGSSITIAAHVEDIDDAPQVKVSVIDHGRGFPPAMTQHAFEKFTR 884 ++L NL+ NA++++ GS + HVE ++ VID G G Q F+ F R Sbjct: 766 QILINLLTNALRFTDTGS---VTLHVE--CTGVSMRFDVIDTGIGIAVQDRQRIFQPFER 820 Query: 885 G--DNESATPGVGLGLAICRAIIEAHQGRIWIAPQEAGQGATVCFTLP---VEAQPALPE 939 G PG GLGLAI +I G + + + GQG+T LP + A ALP+ Sbjct: 821 GAAGRLRGEPGAGLGLAITEKLILMMNGSLNLISTQ-GQGSTFVVRLPLMEINAFEALPQ 879 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,951,818 Number of extensions: 78240 Number of successful extensions: 402 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 350 Number of HSP's successfully gapped: 24 Length of query: 940 Length of database: 1,221,021 Length adjustment: 92 Effective length of query: 848 Effective length of database: 880,897 Effective search space: 747000656 Effective search space used: 747000656 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)