BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3687.p (236 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981368|ref|YP_001353509.1| two component system transcript... 273 6e-75 gi|152981341|ref|YP_001354865.1| two-components system response ... 132 3e-32 gi|152981322|ref|YP_001355016.1| two components system response ... 129 2e-31 gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 127 5e-31 gi|152983086|ref|YP_001353412.1| response regulator of copper se... 126 1e-30 >gi|152981368|ref|YP_001353509.1| two component system transcriptional regulatory protein for high-affinity potassium transport system [Janthinobacterium sp. Marseille] Length = 232 Score = 273 bits (698), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 132/232 (56%), Positives = 174/232 (75%), Gaps = 2/232 (0%) Query: 1 MQEHAGNIVFIEDDPHIRKLVKSALEQEGFIVHEAKNAREGVTEAGTRKPDLIILDLGLP 60 M E + +ED+P IR+ V++A+E+EG+ V+EA+ + G+ +AGTRKP+LIILDLGLP Sbjct: 1 MSESVPIALLVEDEPQIRRFVRAAMEEEGWHVYEAETMKRGLIDAGTRKPNLIILDLGLP 60 Query: 61 DADGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 D DG I++IR WS VPI++LSAR E +K++ALDAGADDYL+KPFG+ ELLAR+R+ + Sbjct: 61 DGDGMDFIADIRAWSPVPIIVLSARVSEGDKIKALDAGADDYLIKPFGVGELLARVRSTI 120 Query: 121 RRHARASGAGQSSGRYRLGEVVVDLPARSVSRNGEALHLTQIEYRLLSTLLRDAGRVITH 180 RRH R G Q G + G+V VDL AR V++ + +HLT EYRLLS L+ +AGRV+T+ Sbjct: 121 RRHRRVDGDAQ--GSFSFGDVKVDLNARLVTKANQMVHLTPTEYRLLSVLVANAGRVVTN 178 Query: 181 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLEHDAAQPVHILTEIGVGYRVAE 232 QLL WGPSH+E GHYLRIYM LRQKLE D AQP ++LTE VGYR+ + Sbjct: 179 PQLLREVWGPSHSESGHYLRIYMGHLRQKLEDDPAQPRYLLTETAVGYRLLQ 230 >gi|152981341|ref|YP_001354865.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 132 bits (331), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 125/228 (54%), Gaps = 9/228 (3%) Query: 8 IVFIEDDPHIRKLVKSALEQEGFIVHEAKNAREGVTEAGTRKPDLIILDLGLPDADGKQV 67 I+ IED+ I + + LE G+++ A N G A D +ILD+ LP DG + Sbjct: 3 ILIIEDNADIVANLYAFLEPRGYVLDSAANGYAGFALAAQHDYDAVILDIKLPGIDGLTL 62 Query: 68 ISEIRN--WSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHAR 125 ++R+ P+++L+AR +KV D+GADDYLVKPF + E+ R++A +R R Sbjct: 63 CRKMRDELQKDTPVLMLTARDTLDDKVAGFDSGADDYLVKPFSLLEVEVRLKALVR---R 119 Query: 126 ASGAGQSSGRYRLGEVVVDLPARSVSRNGEALHLTQIEYRLLSTLLRDAGRVITHRQLLV 185 A G Q + +G +V D V R+G + LT+ +++L+ L+++A +V++ L + Sbjct: 120 ARGKNQGTNFLSVGNLVFDTSTYQVKRDGIPISLTKTGFKILTCLMKEAPKVVSRETLEL 179 Query: 186 AGWGPSHAEDGHYLRIYMQRLRQKLEHDAAQPVHILTEI-GVGYRVAE 232 WG H D LR ++ LRQ L D A P +L + G+GYR+ + Sbjct: 180 EVWG-DHPPDSDALRTHIHALRQAL--DKAHPFAMLRTVQGIGYRLVD 224 >gi|152981322|ref|YP_001355016.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 129 bits (323), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 127/238 (53%), Gaps = 6/238 (2%) Query: 3 EHAGNIVFIEDDPHIRKLVKSALEQEGFIVHEAKNAREGVTEAGTRKPDLIILDLGLPDA 62 E+ +I+ ++DD IR+L+ S LE+ G A N R+ T DLI+LDL LP Sbjct: 2 ENNDHILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGE 61 Query: 63 DGKQVISEIR--NWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 DG + E+R W ++P+++L+AR +E++++ L+ GADDYL KPF + EL AR+R+ L Sbjct: 62 DGLTLCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVL 121 Query: 121 RRHARASGAGQSSGRYR---LGEVVVDLPARS-VSRNGEALHLTQIEYRLLSTLLRDAGR 176 RR Q S + G+ +D AR + G + L+ EYRLL L R Sbjct: 122 RRARMLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQR 181 Query: 177 VITHRQLLVAGWGPSHAEDGHYLRIYMQRLRQKLEHDAAQPVHILTEIGVGYRVAEVV 234 V+T QLL G + + + RLRQ+L+ DA +P +I T GY + V Sbjct: 182 VLTRDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFSAAV 239 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 127 bits (320), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 127/227 (55%), Gaps = 8/227 (3%) Query: 7 NIVFIEDDPHIRKLVKSALEQEGFIVHEAKNAREGVTEAGTRKPDLIILDLGLPDADGKQ 66 I+ +ED+ + ++ L + GF+V A++ EG+ A +L+ILD+ LP DG Q Sbjct: 2 KILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGWQ 61 Query: 67 VISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHARA 126 ++ E+R P++ L+AR + ++V+ L+ GADDYLVKPF EL+AR+R LRR Sbjct: 62 LLRELRKVRDTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRR---- 117 Query: 127 SGAGQSSGRYRLGEVVVDLPARSVSRNGEALHLTQIEYRLLSTLLRDAGRVITHRQLLVA 186 G + S + ++ +D+ R V+RNGE L LT E+ LL L + G V++ + Sbjct: 118 -GPVRESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQ 176 Query: 187 GWGPSHAEDGHYLRIYMQRLRQKLEHDAAQPVHILTEI-GVGYRVAE 232 W + D + + + ++RLR KL D P ++ + G+GY + E Sbjct: 177 VWDMNFDSDTNVVDVAIRRLRAKL--DDPHPRKLIQTVRGIGYVLEE 221 >gi|152983086|ref|YP_001353412.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 230 Score = 126 bits (316), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 125/222 (56%), Gaps = 6/222 (2%) Query: 8 IVFIEDDPHIRKLVKSALEQEGFIVHEAKNAREGVTEAGTRKPDLIILDLGLPDADGKQV 67 ++ +ED+ + ++ L + GF V A N +G A T DLIILD+ LPD DG ++ Sbjct: 3 LLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGSYDLIILDVMLPDIDGWKI 62 Query: 68 ISEIRN-WSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHARA 126 + +R+ +SVP + L+AR +++V+ L+ GADDY+VKPF ELLAR+R LRR Sbjct: 63 LHALRSAGNSVPALFLTARDGVADRVKGLELGADDYMVKPFAFSELLARVRTLLRR---- 118 Query: 127 SGAGQSSGRYRLGEVVVDLPARSVSRNGEALHLTQIEYRLLSTLLRDAGRVITHRQLLVA 186 R ++ ++V+DL R+ +R G+ L LT E+ LL L+R G V+ + Sbjct: 119 GNPSPLVDRLQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQ 178 Query: 187 GWGPSHAEDGHYLRIYMQRLRQKLEHDAAQPVHILTEIGVGY 228 W + D + + + ++RLR K++ D P I T GVGY Sbjct: 179 IWDINFNSDTNVIDVAIRRLRAKMDDD-YDPKLISTIRGVGY 219 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 507,417 Number of extensions: 19578 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 133 Number of HSP's successfully gapped: 34 Length of query: 236 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 156 Effective length of database: 925,261 Effective search space: 144340716 Effective search space used: 144340716 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)