BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3684.p
         (268 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982722|ref|YP_001351858.1| hypothetical protein mma_0168 [...   158   4e-40
gi|152982651|ref|YP_001353493.1| hypothetical protein mma_1803 [...   137   9e-34

>gi|152982722|ref|YP_001351858.1| hypothetical protein mma_0168
           [Janthinobacterium sp. Marseille]
          Length = 246

 Score =  158 bits (399), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 93/227 (40%), Positives = 129/227 (56%), Gaps = 12/227 (5%)

Query: 48  PLH-LTGNIGVVSQYVFRGTTQTNQKPALQGGFDLNHDNGLYAGVWLSNVSWISDGNPAA 106
           P H  TGN+ VVS Y FRG +QT ++PA+QGGFD  H +G Y G W SNVS    GN   
Sbjct: 26  PEHSFTGNLSVVSDYRFRGISQTFKQPAVQGGFDYAHSSGFYVGNWNSNVS----GNSFT 81

Query: 107 SASLEADLYGGWKPALNDWLSGDIGVLHYAYPGSYPTNMTKPDTTELYLGVDAKWIAFKY 166
             S+E DLYGG+K  +   ++ D+GVL+Y YPG+      K +TTELY  +  KW   KY
Sbjct: 82  DGSIEMDLYGGYKFNITPDVTADVGVLYYYYPGAQILGGKKYNTTELYGSIGYKWFTLKY 141

Query: 167 SYSTGDTFGNAGTSGTTYADLSVNHELFAGINGLAHIGRQHYTGPNASSLSYTDWKLGLS 226
           S +  D FG   ++G+ Y +L+ N E+        H+G Q     N  + SYTD+KL L+
Sbjct: 142 SNAVSDFFGAPDSNGSDYIELNANFEVMDKTTLGFHVGHQKV--KNVDNASYTDYKLSLA 199

Query: 227 RDYSGYVLGLAYTGSNAPNAGYII-----RGKNIGGNQWVASINKSF 268
           RD+    +GLA  G++A    Y +     + K +G    V SI+K+F
Sbjct: 200 RDFGFATIGLAVVGTDADKGFYSLTNAAGKTKKLGDTTAVLSISKAF 246


>gi|152982651|ref|YP_001353493.1| hypothetical protein mma_1803
           [Janthinobacterium sp. Marseille]
          Length = 269

 Score =  137 bits (344), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 95/250 (38%), Positives = 139/250 (55%), Gaps = 21/250 (8%)

Query: 32  SVAAAPAA--AAADTSASPLHLTGNIGVVSQYVFRGTTQTNQKPALQGGFDLNHD-NGLY 88
           ++AAA  A  A A+ S     ++ N  VVS Y +RG +QT  +PALQGG D  H+ +G Y
Sbjct: 28  AIAAAFTASIAHAEDSKPDNEISFNAAVVSDYRYRGISQTRLQPALQGGADYVHNPSGFY 87

Query: 89  AGVWLSNVSWISDGNPAASASLEADLYGGWKPALNDWLSGDIGVLHYAYPGSYPTNMTKP 148
           AG WLS + W+ DG    S  +E D+YGG +  L   ++ D+GVL Y YP    +N   P
Sbjct: 88  AGTWLSTIKWVKDG--GGSGDVEVDVYGGKRGELGKNVTYDLGVLTYVYP----SNGLNP 141

Query: 149 D--TTELY--LGVDAKWIAFKYSYSTGDTFGNAGTSGTTYADLSVNHELFAGINGLAHIG 204
           +  TTE+Y  LG    +I  KYS+S  + FG   +  + Y D+  N ++  G     H G
Sbjct: 142 NANTTEVYGQLGYGPAYI--KYSHSVTNLFGFVDSKNSGYLDIGANLDISNGYILNLHAG 199

Query: 205 RQHYTGPNA----SSLSYTDWKLGLSRDYSGYVLGLAYTGSNAPNAGYI--IRGKNIGGN 258
            Q   G NA      LSYTDWK+G+S+D+  +   LAY G++A  + Y   + GK +G +
Sbjct: 200 HQKVAGDNAGVSNDRLSYTDWKVGVSKDFGLFTGALAYIGTDADKSAYASPVNGKFMGKD 259

Query: 259 QWVASINKSF 268
             + +I+K+F
Sbjct: 260 ALILTISKTF 269


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 663,046
Number of extensions: 31605
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 186
Effective length of database: 917,867
Effective search space: 170723262
Effective search space used: 170723262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)