BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3678.p (264 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980360|ref|YP_001351930.1| enoyl-CoA hydratase [Janthinoba... 103 8e-24 gi|152982214|ref|YP_001353072.1| enoyl-CoA hydratase [Janthinoba... 99 3e-22 gi|152979927|ref|YP_001355051.1| enoyl(3-hydroxyisobutyryl)-coen... 77 1e-15 >gi|152980360|ref|YP_001351930.1| enoyl-CoA hydratase [Janthinobacterium sp. Marseille] Length = 258 Score = 103 bits (258), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 73/257 (28%), Positives = 123/257 (47%), Gaps = 15/257 (5%) Query: 12 HDQRGITTLTLNRPQQFNALSEAMLQALQTQLDALAHDDQVRCVILAANGRAFCAGHDLR 71 H + G+ +TLNRP NAL++ ++ L L + DD + C+I+ + +AF AG D+ Sbjct: 11 HGKVGV--ITLNRPAALNALNDKLMDELGLALQSFDGDDDIGCMIITGSEKAFAAGADIG 68 Query: 72 EMHATPEQAYYQQLFERCSQLMQSLRALPVPVIAKVQGLATAAGCQLVASCDLAVAADSA 131 M Y+ + ++ + +R++ PVIA V G A GC+L CD +AAD+A Sbjct: 69 AMATYTYMDVYKG--DYITRNWEQIRSVRKPVIAAVAGYALGGGCELAMMCDFIIAADTA 126 Query: 132 RFAVSGINVGLFCSTPAVALTRNLP----IKRAFEMLVTGKFIDAATAADWGLINQAVPE 187 +F I +G+ P T+ LP +A ++ +T + +DAA A GL+++ V Sbjct: 127 KFGQPEIKLGII---PGAGGTQRLPRAVSKSKAMDLCLTARMMDAAEAERAGLVSRVVAA 183 Query: 188 TQLDAATEALAREIC--SKPAISMARGKALVYQQQMMALPDAYAHAAEVMACNIMDGEAM 245 +L A A I S P + M K + + L + + + Sbjct: 184 DKLHEEALAAATVIANMSLPMVMMV--KESINRAYETTLAEGVQFERRLFHSTFATADQK 241 Query: 246 EGIAAFLEKRAPQWPST 262 EG+ AF+EKRA + ++ Sbjct: 242 EGMQAFIEKRAAHFKNS 258 >gi|152982214|ref|YP_001353072.1| enoyl-CoA hydratase [Janthinobacterium sp. Marseille] Length = 269 Score = 99.0 bits (245), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 87/256 (33%), Positives = 130/256 (50%), Gaps = 13/256 (5%) Query: 11 RHDQRGITTLTLNRPQQFNALSEAMLQALQTQLDALAHDDQVRCVILAANGRAFCAGHDL 70 RH+ I LT++ P NAL M A L DD +R VIL FCAG +L Sbjct: 19 RHEATLI--LTISNPGAKNALHPDMFAAAVEVLSTAERDDSIRAVILTGADNFFCAGGNL 76 Query: 71 REM--HATPEQAYYQQLFERCSQLMQSLRALPVPVIAKVQGLATAAGCQLVASCDLAVAA 128 ++ H +++ + ++++R P PVIA V+G A AG L +CDL VA Sbjct: 77 NKLLEHRAIDKSQQGDAVDSLRSWIEAIRDCPKPVIAAVEGAAAGAGFSLALACDLIVAG 136 Query: 129 DSARFAVSGINVGLFCSTP----AVALTRNLPIKRAFEMLVTGKFIDAATAADWGLINQA 184 ++++FA+S VGL TP + LT+ LP + A E+L+ GK + A + GLIN+ Sbjct: 137 NNSKFAMSYSRVGL---TPDGGASWFLTQALPRQLATEILLEGKAVAATRLHELGLINRL 193 Query: 185 VPE-TQLDAATEALAREICSKPAISMARGKALVYQQQMMALPDAYAHAAEVMACNIMDGE 243 V + T LDAA + A E+ ++ R K+LV + L + ++ + Sbjct: 194 VADGTTLDAAQQ-WADELAELSGHAVERIKSLVREGGSNTLAQHFESEKFHFVESLNHRD 252 Query: 244 AMEGIAAFLEKRAPQW 259 A+EGI AFLEKR P + Sbjct: 253 ALEGINAFLEKRKPHY 268 >gi|152979927|ref|YP_001355051.1| enoyl(3-hydroxyisobutyryl)-coenzyme A hydratase protein [Janthinobacterium sp. Marseille] Length = 374 Score = 77.0 bits (188), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 10/195 (5%) Query: 14 QRGITTLTLNRPQQFNALSEAMLQALQTQLDALAHDDQVRCVILAAN-GRAFCAGHDLRE 72 + G+ LTLNRP+ N+LS M++ L +L A HD VR V++ ++ +AFCAG D+R Sbjct: 21 ENGLARLTLNRPEAMNSLSLPMVRTLAEKLGAWQHDPAVRAVLIDSSLPKAFCAGGDIRF 80 Query: 73 MHA------TPEQAYYQQLFERCSQLMQSLRALPVPVIAKVQ---GLATAAGCQLVASCD 123 H T A + F L + P P IA + Q A+ Sbjct: 81 FHEVAQGGLTGGSALLEDFFTEEYALNHLIHHYPKPYIALMDGIVMGGGMGIAQSSAAAS 140 Query: 124 LAVAADSARFAVSGINVGLFCSTPAVALTRNLPIKRAFEMLVTGKFIDAATAADWGLINQ 183 + V + R A+ +N+GLF LP + + ++G+ + AA A L + Sbjct: 141 IRVVTERTRMAMPEVNIGLFPDVGGGYFLSRLPGELGTYLGLSGEIVGAADALYANLADV 200 Query: 184 AVPETQLDAATEALA 198 VP ++L A LA Sbjct: 201 FVPRSELPALMNLLA 215 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.130 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 509,346 Number of extensions: 16985 Number of successful extensions: 73 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 66 Number of HSP's successfully gapped: 3 Length of query: 264 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 182 Effective length of database: 917,867 Effective search space: 167051794 Effective search space used: 167051794 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)