BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3677.p (254 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982693|ref|YP_001351727.1| GntR family transcriptional reg... 138 3e-34 gi|152982451|ref|YP_001355369.1| GntR family transcriptional reg... 94 6e-21 gi|152982557|ref|YP_001351913.1| GntR family transcriptional reg... 92 3e-20 gi|152980771|ref|YP_001354254.1| GntR family transcriptional reg... 75 3e-15 gi|152981662|ref|YP_001352127.1| GntR family transcriptional reg... 62 4e-11 >gi|152982693|ref|YP_001351727.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 284 Score = 138 bits (347), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/215 (40%), Positives = 122/215 (56%), Gaps = 10/215 (4%) Query: 39 IYERIVGAIMEHRLTPGTKLVEEKLAGIFGVNRTRVREVLARLAHEGLIITIPNRGAFVA 98 I RI +I+ +L PGT+L E++LA +FGV+RT +RE L RLA G+++ RG FV Sbjct: 13 IAARITESILAKQLAPGTRLGEQQLADLFGVSRTLIREALMRLATRGIVMVSARRGWFVI 72 Query: 99 SPTPEEARNIFAARRLLEPALLRH---LCEHTRPEHIALLRAHVAEEAQARADNDRRAII 155 PT EAR F ARR++E LLRH L +H I LR H+A E A A +D A Sbjct: 73 EPTASEAREAFEARRVIELGLLRHARPLSKHA----IGQLREHIAREQAAIAGDDVGARS 128 Query: 156 RLSGEFHIRIADMVDNPVMSKMMRELASLTCLIIVLYDSPTVPACTHDDHGHIIDAISEG 215 L G+FH+ + + + N ++S +R+L + T L +L S + + +DH HI+ A+ G Sbjct: 129 YLLGDFHVCLCECLGNNLLSDTLRDLTARTTLTAMLRQSSSQAVDSCEDHVHIVAALESG 188 Query: 216 RTEDAIATMLEHLHHIESVLDMSTPQGEDDDLEAL 250 ++A MLEHL +ES L P D L AL Sbjct: 189 DIDEAERLMLEHLQVVESTLYELAP---SDPLNAL 220 >gi|152982451|ref|YP_001355369.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 220 Score = 94.4 bits (233), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 59/154 (38%), Positives = 83/154 (53%) Query: 39 IYERIVGAIMEHRLTPGTKLVEEKLAGIFGVNRTRVREVLARLAHEGLIITIPNRGAFVA 98 I + I GAI E RL PGTKL E +LA IFGV+RT +R+ L RL+ E LI P R + VA Sbjct: 6 IVQTISGAIYERRLPPGTKLNERELAEIFGVSRTVIRQALIRLSQEELITISPKRASQVA 65 Query: 99 SPTPEEARNIFAARRLLEPALLRHLCEHTRPEHIALLRAHVAEEAQARADNDRRAIIRLS 158 P+ +EA +++ ++E ++ L + PE IA+LR H A+E A D +L Sbjct: 66 HPSFQEAFDLYQILHVVESGVVDILMQTITPEQIAMLREHTAKEHAAFKAEDHDLADKLG 125 Query: 159 GEFHIRIADMVDNPVMSKMMRELASLTCLIIVLY 192 FH + + N ++ M L LI LY Sbjct: 126 RGFHTLLISCLANEPLNNMHARLRRKEALITALY 159 >gi|152982557|ref|YP_001351913.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 236 Score = 92.0 bits (227), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 92/195 (47%) Query: 39 IYERIVGAIMEHRLTPGTKLVEEKLAGIFGVNRTRVREVLARLAHEGLIITIPNRGAFVA 98 I + + A++ RL PGTKL E ++A IFGV RT +R+ L RL+ + L+ NRGA + Sbjct: 13 IVDAVTEAVLAQRLVPGTKLNEAEMADIFGVGRTVIRQALIRLSQDKLVTIEHNRGAHIT 72 Query: 99 SPTPEEARNIFAARRLLEPALLRHLCEHTRPEHIALLRAHVAEEAQARADNDRRAIIRLS 158 + E R F +LE A L + IA LR H+A ++ A +D RL Sbjct: 73 ELSDLEIRETFEVLAMLECAALEKFIKTITAFDIAKLRQHIAHQSGAHQHHDIDQEFRLG 132 Query: 159 GEFHIRIADMVDNPVMSKMMRELASLTCLIIVLYDSPTVPACTHDDHGHIIDAISEGRTE 218 +FH+ I + N V+ + +L + LI Y DH +ID I G Sbjct: 133 PDFHVLIVGLAHNRVLEDIHGKLTAQERLITSQYYGEFDHVHLCQDHSQLIDLIESGDLA 192 Query: 219 DAIATMLEHLHHIES 233 A ++ H +ES Sbjct: 193 RAQQLLIGHYRTLES 207 >gi|152980771|ref|YP_001354254.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 75.5 bits (184), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 95/198 (47%), Gaps = 9/198 (4%) Query: 36 GDAIYERIVGAIMEHRLTPGTKLVEEKLAGIFGVNRTRVREVLARLAHEGLIITIPNRGA 95 + + E+I I L PG L E LA FGV+RT +RE L +LA G+++ P RGA Sbjct: 15 SETLREQIEEMIAVGTLKPGQHLDETVLAERFGVSRTPIREALIQLASMGIVVIRPRRGA 74 Query: 96 FVASPTPEEARNIFAARRLLEPALLRHLCEHTRP-EHIALLRAHVAEEAQARADNDRRAI 154 VA P++ +F LE R P EH L+ H+A + QAR D D A Sbjct: 75 IVAEIGPQQLIEMFEVMAELEAMCARLAARRMSPAEHAILMATHLACK-QARDDADSDAY 133 Query: 155 IRLSGEFHIRIADMVDNPVMSK----MMRELASLTCLIIVLYDSPTVPACTHDDHGHIID 210 + EFH +I N + + + R L L + + + T + D+HG ++D Sbjct: 134 FYKNEEFHQQIYIGSKNTFLEEQARALQRRLRPYRRLQLRVRNRVT---ASFDEHGAVVD 190 Query: 211 AISEGRTEDAIATMLEHL 228 AI EG+ + A + +H+ Sbjct: 191 AIIEGKGDLAAELLRQHI 208 >gi|152981662|ref|YP_001352127.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 251 Score = 62.0 bits (149), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 65/141 (46%) Query: 37 DAIYERIVGAIMEHRLTPGTKLVEEKLAGIFGVNRTRVREVLARLAHEGLIITIPNRGAF 96 DA+ E + I+E LTPG KL E ++ G++RT +RE + LA EGLI +PNRGAF Sbjct: 27 DAVVEHLQRLIIEGVLTPGMKLNEREVCERLGISRTPLREAMKVLASEGLIDIVPNRGAF 86 Query: 97 VASPTPEEARNIFAARRLLEPALLRHLCEHTRPEHIALLRAHVAEEAQARADNDRRAIIR 156 V+ E F LE E P IA ++ RA ND Sbjct: 87 VSKMNDTEIWEAFEMMSGLEALSGELAAERISPAEIADIKVLHQAMLVCRAQNDLPGYYS 146 Query: 157 LSGEFHIRIADMVDNPVMSKM 177 + H +I + N ++ ++ Sbjct: 147 RNQTIHNKINEAARNSMLRQI 167 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 526,378 Number of extensions: 18687 Number of successful extensions: 62 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 60 Number of HSP's successfully gapped: 7 Length of query: 254 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 173 Effective length of database: 921,564 Effective search space: 159430572 Effective search space used: 159430572 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)