BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3676.p (346 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979787|ref|YP_001352170.1| nitrate transport system substr... 60 2e-10 gi|152982522|ref|YP_001354776.1| ABC-type nitrate/sulfonate/bica... 56 3e-09 >gi|152979787|ref|YP_001352170.1| nitrate transport system substrate-binding protein [Janthinobacterium sp. Marseille] Length = 407 Score = 59.7 bits (143), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 113/259 (43%), Gaps = 17/259 (6%) Query: 11 GLSFKAAALATLLACTALGAGSALAQAKPKIKLAYAKCAHCMSMAMVPALAQNVEIEGIN 70 G + A A + L AGS + K ++K+ + C S+ M + + + GI Sbjct: 10 GATITATAFSGLATQGVWAAGSDKPE-KEEVKIGFIPLTDCASVVMASVMGFDKKY-GIK 67 Query: 71 FTAGSDALTA-----LVSKSVDIAQVTYLAYVSGLDKGF-----DLVAVSGQVNGGSEML 120 +A A LV+ +D A V Y V G+ +G D+ + G N G + Sbjct: 68 IVPTKEASWAGVRDKLVNGELDAAHVLY-GLVYGVHEGIGGAKKDMAVLMGLNNNGQAIT 126 Query: 121 VGKD-SKLGADDWAGLKKLIAQYKAEGKPFRIAASRGNAQDLHMRGELAGHGIDPSKDVQ 179 + K ++ GA D GL KL+ K E + + +A L+ LA +GI+P KD + Sbjct: 127 LSKKLAEGGAIDGPGLAKLMQMEKREYTFAQTFPTGTHAMWLYYW--LATYGINPMKDAK 184 Query: 180 FVNIPNPSDHAAALARGEVELICSVEPFASQIRMTGVGKHFAYPYDQAAGRLTNLIVTRS 239 + +P P A + G ++ C EP+ + + G+G A D ++ T S Sbjct: 185 VITVP-PPQMVANMRVGNMDGYCVGEPWNHRAIVDGIGITAATTQDIWKDHPEKVLGTTS 243 Query: 240 DVIKEHPAEVRETVAAVVK 258 D + ++P R AAV++ Sbjct: 244 DWVAKNPNTARALTAAVLE 262 >gi|152982522|ref|YP_001354776.1| ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 315 Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 15/179 (8%) Query: 65 EIEGINFTAGSDALTALVSKSVDIAQVTYLAYVSGLDKGFDLVAVSGQVNGGSEMLVGKD 124 +IE I F +D A+V+KSVD A G G +V V+ Q N G ++ D Sbjct: 57 KIEVIPFETPTDGKNAVVTKSVDFGTYGLAAATLGAAAGEPVVIVAAQCNRGMAVVARAD 116 Query: 125 SKLGADDWAGLKKLIAQYKAEGKPFRIAASRGNAQDLHMRGELAGHGIDPSKDVQFVNIP 184 SK+ A +K L Q R+ G+ Q++ + L G+ KD++ V + Sbjct: 117 SKI-----ASIKDLKGQ--------RVGILPGSTQEVVILDRLKQEGMT-VKDIKPVRV- 161 Query: 185 NPSDHAAALARGEVELICSVEPFASQIRMTGVGKHFAYPYDQAAGRLTNLIVTRSDVIK 243 + S+ A+AL R +++ EP S G+GK YPY G + ++ T +D +K Sbjct: 162 SFSEMASALERNDIDAFVGAEPGPSISVSRGIGKIVEYPYSTPTGTVNMVMTTHADNLK 220 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.131 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 731,229 Number of extensions: 29869 Number of successful extensions: 89 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 90 Number of HSP's successfully gapped: 2 Length of query: 346 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 262 Effective length of database: 910,473 Effective search space: 238543926 Effective search space used: 238543926 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)