BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3675.p (271 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bica... 183 8e-48 gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bica... 158 3e-40 gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport sys... 141 4e-35 gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport syst... 102 2e-23 gi|152981719|ref|YP_001355226.1| ABC-type nitrate/sulfonate/bica... 80 1e-16 >gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 276 Score = 183 bits (465), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 103/232 (44%), Positives = 139/232 (59%), Gaps = 7/232 (3%) Query: 36 ASLLPAPSRVFATWMDWIFG--INEAAQDSSGKWIYDAMASCLRVTAGYLIAAVSGIALG 93 L+P P V D+ FG ++A ++ ++ S RV G+ AA+ GI LG Sbjct: 46 TQLIPLPKDVGLMLYDFAFGGIYDDAFSETLPLHLWK---SVTRVYGGFFAAALVGIPLG 102 Query: 94 VAIGWWRWVERTIEPTVQMLRPIPPVSWIPLAIIWFGIANKPAIFLVFLGAFFPILMNTV 153 + IG + + ++PT+Q+LRP+P +W+PL++I+FGI AIFLVFLGAF+PI+ NT Sbjct: 103 LLIGRIKVIRDLLDPTLQLLRPVPVTAWLPLSMIFFGIGPNAAIFLVFLGAFYPIVFNTT 162 Query: 154 HGVKTADRNLLRAAAMAGAKQSQLLRFVILPAAMPSIFAGLRIGIGSAWMLTVTAEMVAV 213 GVK D L AA M G S L R V+LPAAMPSI GLR+G G AW+L V EM V Sbjct: 163 FGVKAVDNRLFEAALMLGCNGSSLFRQVVLPAAMPSILNGLRLGHGFAWILIVVGEMTGV 222 Query: 214 KSGLGYALWDSYYFLRYDLVIAAMISIGLLGFLADWILKQIMHSMLRW--QH 263 GLG + D R DLVIA M+ IG++G+ D IL I + +L+W QH Sbjct: 223 PEGLGAVIMDGRMLSRTDLVIAGMVVIGIVGYSTDRILVAINNYLLKWSPQH 274 >gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 296 Score = 158 bits (400), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 97/245 (39%), Positives = 136/245 (55%), Gaps = 11/245 (4%) Query: 20 LLVLGW-EAFSRSGMIPASLLPAPSRVFATWMDWIFGINEAAQDSSGKWIYDAMASCLRV 78 L VLG+ E ++ G I A LLP PS + T +A G ++ + AS RV Sbjct: 55 LAVLGFVEVAAQLGWIQARLLPPPSEIVQTL---------SALLEQGLLVHIS-ASVARV 104 Query: 79 TAGYLIAAVSGIALGVAIGWWRWVERTIEPTVQMLRPIPPVSWIPLAIIWFGIANKPAIF 138 +GY I AV I G+ +G + E EPT Q LR IP ++W+PL ++WFGI P I Sbjct: 105 FSGYAIGAVLAILFGLFVGLSKHAEAFFEPTFQALRAIPSLAWVPLLLLWFGIDETPKIT 164 Query: 139 LVFLGAFFPILMNTVHGVKTADRNLLRAAAMAGAKQSQLLRFVILPAAMPSIFAGLRIGI 198 L+ +GAFFPI + V G++ DR L+ + G L R ++LPAA+PS+F GLR G+ Sbjct: 165 LIAIGAFFPIYLGLVSGIRNVDRKLIELGEIYGLSAPALARRIVLPAALPSLFTGLRNGL 224 Query: 199 GSAWMLTVTAEMVAVKSGLGYALWDSYYFLRYDLVIAAMISIGLLGFLADWILKQIMHSM 258 AWM V AE++A G+GY L D R D+V+AA+ + +LG L D +LK + Sbjct: 225 SLAWMFLVAAELIAATKGIGYLLTDGRETSRPDVVLAAIFLLAILGKLTDGLLKWLETRK 284 Query: 259 LRWQH 263 L W Sbjct: 285 LAWSD 289 >gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport system permease protein [Janthinobacterium sp. Marseille] Length = 276 Score = 141 bits (356), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 90/263 (34%), Positives = 144/263 (54%), Gaps = 13/263 (4%) Query: 2 SGWKQSLSEAKWRFAVPLLLVLGWEAFSRSGMIPASLLPAPSRVFATWMDWIFGINEAAQ 61 S W+ S + + VP+LL+ W+ S+ G + + +LP P F + +AA Sbjct: 20 STWRASGLKKLVPWIVPVLLISVWQIASQLGWLSSRILPEP-----------FAVAKAAW 68 Query: 62 DS--SGKWIYDAMASCLRVTAGYLIAAVSGIALGVAIGWWRWVERTIEPTVQMLRPIPPV 119 + SG+ S R T + + G+ LG+ G ++ E ++ T+QM+R IP + Sbjct: 69 ELALSGELWTHVKVSLWRATTSFAVGGGLGLLLGLLTGTFKTAETLLDTTLQMIRNIPAL 128 Query: 120 SWIPLAIIWFGIANKPAIFLVFLGAFFPILMNTVHGVKTADRNLLRAAAMAGAKQSQLLR 179 + IPL I+WFGI IFLV +G FFP+ +NT HG+++ D+ L+ A G L R Sbjct: 129 ALIPLVILWFGIEETSKIFLVAVGVFFPVYLNTFHGIRSVDKGLIEMAKSYGLSGWSLYR 188 Query: 180 FVILPAAMPSIFAGLRIGIGSAWMLTVTAEMVAVKSGLGYALWDSYYFLRYDLVIAAMIS 239 VILP A+PSI G+R +G W+L + AE ++ +SG+GY ++ FL+ D+V+ ++ Sbjct: 189 DVILPGALPSILVGVRFSLGLVWVLLIVAETISAQSGIGYMTMNAREFLQTDVVLVGILL 248 Query: 240 IGLLGFLADWILKQIMHSMLRWQ 262 LLG LAD + + + LRW Sbjct: 249 YALLGKLADVVSRTLEGYWLRWH 271 >gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport system, permease component [Janthinobacterium sp. Marseille] Length = 309 Score = 102 bits (255), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 139/243 (57%), Gaps = 10/243 (4%) Query: 19 LLLVLGWEAFS-RSGMIPASLLPAPSRVFATWMDWIFGINEAAQDSSGKWIYDAMASCLR 77 + L+L WE S +S IP+ L+ S A + D + + D W + +AS R Sbjct: 67 VFLILVWEIISAKSSGIPSPLVTFQSAQ-ALFADPFY--SNGPNDQGIGW--NILASLKR 121 Query: 78 VTAGYLIAAVSGIALGVAIGWWRWVERTIEPTVQMLRPIPPVSWIPLAIIWFGIANKPAI 137 V G+ +AA+ GI LG IG ++++ P + +L+P+ P++W+P+ ++ F A+ AI Sbjct: 122 VGMGFGMAALVGIPLGFMIGRFKFLSGMFNPIISLLKPVSPLAWLPIGLLVFKAADPAAI 181 Query: 138 FLVFLGAFFPILMNTVHGVKTADRNLLRAAAMAGAKQSQLLRFVILPAAMPSIFAGLRIG 197 + +F+ + +P+++NT GV+ ++ + A + + +++ ++ P+ +P + G+R+ Sbjct: 182 WSIFICSIWPMIINTAVGVQRVPQDYMNVAKVLKLSEWKIVTKILFPSVLPYMLTGVRLA 241 Query: 198 IGSAWMLTVTAEMVAVKSGLGYALWDSYYFLRYDLVIAAMISIGLLGFLADWILKQIMHS 257 IG+AW++ V AEM+ G+G+ +WD + L +I A++ IG++G IL+QI+ Sbjct: 242 IGTAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGL----ILEQILVG 297 Query: 258 MLR 260 + R Sbjct: 298 IAR 300 >gi|152981719|ref|YP_001355226.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 255 Score = 80.5 bits (197), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 15/247 (6%) Query: 19 LLLVLGWEAFSRSGMIPASLLPAPSRVFATWMDWIFGINEAAQDSSGKWIYDAMASCLRV 78 +L VL W+A + LP P ++ +M + ++G+ + +S + Sbjct: 20 VLFVLLWKASGFFAWVNPGTLPDPFKLPHAFMQ---------EWTAGRLLPAIGSSLVHY 70 Query: 79 TAGYLIAAVSGIALGVAIGWWRWVERTIEPTVQMLRPIPPVSWIPLAIIWFGIANKPAIF 138 G + + GIA G+A R E +++LRPIPP++W+ AI WF +++ A F Sbjct: 71 FWGLGLGTLFGIAFGLAAATIRPFELLQAYLIRILRPIPPLAWVVFAIAWFKVSHAGAAF 130 Query: 139 LVFLGAFFPILMNTVHGVKTADRNLLRAAAMAGAKQSQLLR---FVILPAAMPSIFAGLR 195 ++ +G F+ T V+ D A G Q R + LPA P AG+R Sbjct: 131 VISIGVFWINYYATASAVRNIDPRFYELARSFG--QGSYWRRAVSITLPAIAPGTLAGIR 188 Query: 196 IGIGSAWMLTVTAEMVAVKSGLGYALWDSYYFLRYDLVIAAMISIGLLGFLADWILKQIM 255 GIG AWM + AE++ V G+G + + Y+ V+ M++I L+ ++D I I Sbjct: 189 TGIGQAWMTLIAAELLGVP-GMGQEMNAAAGVGAYEAVVIYMLAISLVYAISDLIYVLIE 247 Query: 256 HSMLRWQ 262 +L W+ Sbjct: 248 KRVLSWR 254 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.138 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 687,285 Number of extensions: 28811 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 171 Number of HSP's successfully gapped: 6 Length of query: 271 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 189 Effective length of database: 917,867 Effective search space: 173476863 Effective search space used: 173476863 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)