BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3674.p (263 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 228 3e-61 gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport sys... 194 5e-51 gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-bi... 186 2e-48 gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPa... 175 3e-45 gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bica... 173 1e-44 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 228 bits (581), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 111/240 (46%), Positives = 158/240 (65%), Gaps = 2/240 (0%) Query: 4 IELNDIVKVFKDRKRGTDMLAIDHVSLQLEKKEFLCLLGPSGCGKSTLLNMIAGFEFPTS 63 I++ + KVF G + A+ V+L + K EF+CL+G SGCGKSTLL ++AGFE +S Sbjct: 14 IDIKGVSKVFS--IGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTSS 71 Query: 64 GEVRVAGRAITGPGADRGMVFQQANLMPWLPVWDNVAFSLKLQGKSAAQRRAAAQPFIET 123 G + G I GP +RGMVFQ L PWL V +N+ F + + A+ + + + Sbjct: 72 GSANMYGMPIDGPSPERGMVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSAYYTDM 131 Query: 124 VKLKGFENHYPSELSGGMAQRVGIARALLQNPSVILMDEPFAALDAQTKMEMQEELVALW 183 V L F N+YP +LSGGM QRV IAR L + V+LMDEPF ALDA T+ ++Q++L+ +W Sbjct: 132 VGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDLLEIW 191 Query: 184 QRYEGTIVFVTHSVDEALILATKVAVMTHRPGHMRELIDIDLARPRDTTTPEFNQYKRHV 243 +R + T+VFVTH+V+EA++L+ +V VMT PG + E I +DLARPRD T EFN+ +R + Sbjct: 192 ERTKVTVVFVTHAVEEAVMLSDRVVVMTAGPGRIEEDIKLDLARPRDITAVEFNEIRRDI 251 >gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 294 Score = 194 bits (493), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 109/255 (42%), Positives = 156/255 (61%), Gaps = 14/255 (5%) Query: 3 FIELNDIVKVFKDRKRGTDMLAIDHVSLQLEKKEFLCLLGPSGCGKSTLLNMIAGFEFPT 62 ++++D+ ++ R+R + A VS + + + LLGPSGCGKSTLL +AGF P Sbjct: 39 LLQVDDVSLEYRTRERV--VRATHRVSFDVHQADRFVLLGPSGCGKSTLLKAVAGFILPV 96 Query: 63 SGEVRVAGRAITGPGADRGMVFQQAN-LMPWLPVWDNVAFSL---KLQGKSAAQRRAAAQ 118 GE+R+ G+A+T PG DR +VFQ+ + L PW V NV F L + G+ A+ RA Sbjct: 97 EGEIRLDGKAVTAPGPDRIVVFQEFDQLSPWKTVKQNVIFPLLASRTLGRKEAEERALH- 155 Query: 119 PFIETVKLKGFENHYPSELSGGMAQRVGIARALLQNPSVILMDEPFAALDAQTKMEMQEE 178 ++ V L F + +P +LSGGM QRV IARAL P V+LMDEPFAALDA T+ +MQEE Sbjct: 156 -YLAKVGLSKFSDVHPHQLSGGMKQRVAIARALAMQPRVLLMDEPFAALDALTRRKMQEE 214 Query: 179 LVALWQRYEGTIVFVTHSVDEALILATKVAVMTHRPGHMRELI---DIDLARPRDTTTPE 235 L+ LW T++FVTHS++EAL++ ++A+++ PG MR I D LA T E Sbjct: 215 LLQLWDEVHFTLLFVTHSIEEALVVGNRIALLSPHPGRMRAEINSHDFSLASLGST---E 271 Query: 236 FNQYKRHVLSLIREE 250 F + + ++ EE Sbjct: 272 FQNTAQRIHHMLFEE 286 >gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 268 Score = 186 bits (471), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 97/232 (41%), Positives = 146/232 (62%), Gaps = 8/232 (3%) Query: 24 AIDHVSLQLEKKEFLCLLGPSGCGKSTLLNMIAGFEFPTSGEVRVAGRAITGPGADRGMV 83 A+ +V+L + K EF+ L+G SGCGKSTLLN+IAG T G + R I GP +R +V Sbjct: 27 ALTNVNLTVSKGEFITLIGHSGCGKSTLLNLIAGLTQATGGMLLCGNREIAGPSPERAVV 86 Query: 84 FQQANLMPWLPVWDNVAFSLKL---QGKSAAQRRAAAQPFIETVKLKGFENHYPSELSGG 140 FQ +L+PWL ++NV +++ +S A+ +A + + V L E P+E+SGG Sbjct: 87 FQNHSLLPWLTCYENVYLAVERVFSATESKAELKARTRAALALVGLSHAEQKRPNEISGG 146 Query: 141 MAQRVGIARALLQNPSVILMDEPFAALDAQTKMEMQEELVALWQRYEGTIVFVTHSVDEA 200 M QRVGIARAL P V+LMDEPF ALDA T+ +Q+EL+ + T+V VTH VDEA Sbjct: 147 MKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKIVAATGSTVVMVTHDVDEA 206 Query: 201 LILATKVAVMTHRP-GHMRELIDIDLARPRDTTT----PEFNQYKRHVLSLI 247 ++L+ ++ ++T+ P + E++++ LARPR+ P ++QY+ VL + Sbjct: 207 VLLSDRIVMLTNGPSATIGEILEVKLARPRERVMLAQDPLYSQYRTAVLEFL 258 >gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 175 bits (443), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 93/225 (41%), Positives = 136/225 (60%), Gaps = 1/225 (0%) Query: 19 GTDMLAIDHVSLQLEKKEFLCLLGPSGCGKSTLLNMIAGFEFPTSGEVRVAGRAITGPGA 78 G I +SL +E EF+ ++G SG GKSTLL AG P+SG+V++ + G Sbjct: 16 GASAPVIQDLSLTIEAGEFVAIVGGSGVGKSTLLRAAAGLIAPSSGDVQLKLPQLPGR-R 74 Query: 79 DRGMVFQQANLMPWLPVWDNVAFSLKLQGKSAAQRRAAAQPFIETVKLKGFENHYPSELS 138 R +VFQ L+PW V DNVA+ L+ G SA ++++ + ++ L F +P +LS Sbjct: 75 RRAVVFQDGRLLPWRTVADNVAYGLETLGISADEQQSRIKQALQLTGLAEFGERWPHQLS 134 Query: 139 GGMAQRVGIARALLQNPSVILMDEPFAALDAQTKMEMQEELVALWQRYEGTIVFVTHSVD 198 GG QRVGIARAL P ++LMDEPF+A+DA T+ +Q EL+ +WQ + ++FVTH +D Sbjct: 135 GGQVQRVGIARALAVQPDLLLMDEPFSAVDALTRRNLQAELIRIWQATQSAVMFVTHDID 194 Query: 199 EALILATKVAVMTHRPGHMRELIDIDLARPRDTTTPEFNQYKRHV 243 EA+ LA +V V+ P + E + IDL RPR + F +Y H+ Sbjct: 195 EAVFLADRVIVLGGSPATVVENLRIDLPRPRVRSDVAFAEYVAHL 239 >gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 433 Score = 173 bits (438), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 96/248 (38%), Positives = 139/248 (56%), Gaps = 4/248 (1%) Query: 3 FIELNDIVKVFKDRKRGTDMLAIDHVSLQLEKKEFLCLLGPSGCGKSTLLNMIAGFEFPT 62 IEL + K F+ GT ++ V L + E + LLG SG GKSTLL ++AG Sbjct: 6 LIELKGVDKSFQTAD-GTPSSVLEQVDFTLTEGEIVALLGKSGSGKSTLLRIMAGLIPAD 64 Query: 63 SGEVRVAGRAITGPGADRGMVFQQANLMPWLPVWDNVAFSLKLQGKSAAQRRAAAQPFIE 122 SG G+ I GP A MVFQ L PWL V NV L+ QG A+R A ++ Sbjct: 65 SGSAMYRGKNIYGPVAGIAMVFQSFALFPWLTVQQNVELGLEAQGVPPAEREKRADAMLD 124 Query: 123 TVKLKGFENHYPSELSGGMAQRVGIARALLQNPSVILMDEPFAALDAQTKMEMQEELVAL 182 + L GF P ELSGGM QRVGIAR L+ P V+LMDE F+ALD T ++++++ + Sbjct: 125 LIGLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILEM 184 Query: 183 WQRYE---GTIVFVTHSVDEALILATKVAVMTHRPGHMRELIDIDLARPRDTTTPEFNQY 239 W+ I+ V+H+++EA++++ ++ V++ PG +R I IDL RPR+ + E Sbjct: 185 WEENRIPTKGILIVSHNIEEAVMMSDRIVVLSSSPGRIRSEIKIDLPRPRNPDSAEVRAL 244 Query: 240 KRHVLSLI 247 V +L+ Sbjct: 245 IDEVYALM 252 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 568,743 Number of extensions: 22452 Number of successful extensions: 258 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 194 Number of HSP's successfully gapped: 62 Length of query: 263 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 182 Effective length of database: 921,564 Effective search space: 167724648 Effective search space used: 167724648 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)