BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3672.p
         (474 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981059|ref|YP_001354636.1| dihydroorotase, multifunctional...    96   5e-21

>gi|152981059|ref|YP_001354636.1| dihydroorotase, multifunctional
           complex type [Janthinobacterium sp. Marseille]
          Length = 427

 Score = 95.9 bits (237), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 187/453 (41%), Gaps = 47/453 (10%)

Query: 8   IRNGTVATAADIM--QCDVGIKDGKVAMLGRGLPPG---REEIDASGKLVLPGGVDAHCH 62
           I+NG +   A+ +  Q DV I  GK+A +G+  P G    + IDASG +V PG VD    
Sbjct: 5   IKNGHLVDPANGIDAQQDVYIAAGKIAGIGKA-PEGFTASKVIDASGLIVAPGLVDLSAR 63

Query: 63  LDQPMEEGLRMADDFRSGTISAACGGTTTVIPFAAQAKGGSLRAAVEDYHRRAEG-KAVI 121
           L +P   G        S   +A  GG T+++              VE    RA+      
Sbjct: 64  LREP---GYEHKATLESEMQAAVQGGVTSLVCPPDTEPVLDEPGLVEMLKHRAKSLNQAH 120

Query: 122 DYAFHMIVSDPSEEVLKHELPQLVREGYTSFKIYMTYDDLKLNDRQILDLLALARREGAL 181
            Y    + +    E L  E+ +L   G   F            D  ILD   L R     
Sbjct: 121 VYPLGALTAGLKGESLT-EMAELSEAGCIGFS---------QADNPILDTTVLLR----- 165

Query: 182 VMVHAENADCIGWLTEQ--------LEEAGLTAPKYHAHSRPMMVEREATHRAIALSELV 233
            M +A+  +   WL  Q        +  +G  A +      P+M E  A H  + L  + 
Sbjct: 166 AMQYAKTFEYTVWLRPQDPHLGRTGVAHSGPVASRLGLSGVPVMAETVALHTILELVRVT 225

Query: 234 DVPILIVHVSGREAIEQIRWAHGHGLRIHAETCPQYLVLTADHLDDGYHGAKCVCSPPPR 293
              + +  +S    +E +R A   GL +  +    ++ LT +  D G+  +    +PP R
Sbjct: 226 GTRVHLCRMSTAAGLELVRAAKKEGLPVSCDVGAHHVHLTEN--DIGFFDSNARLTPPLR 283

Query: 294 DKANQQYVWDGLASGLFTVFSSDHAPFRYEDAQGKKPGGREVPFRYIPNGTPGLETRLPI 353
            + ++  + + L  G      SDH P   ++        + +PF     G  GLE  L +
Sbjct: 284 SQRDRDAIRNALLDGTIDAICSDHTPVDDDE--------KLLPFGEASPGATGLELLLSL 335

Query: 354 L--FSEGVGKGRIDLNRFVALTATDPAKMYGLYPRKGTIAIGSDADIAIWDPHRAVTVRN 411
              ++E    G+  + R VA   TD A++ GL    G +++GS ADI ++DP+   TV  
Sbjct: 336 ALKWAEDCVDGKQQVARAVAKVTTDAARIVGL--PSGQLSVGSVADICLFDPNERWTVAA 393

Query: 412 EMLHHDVDYTPYEGMELTGWPVLTLSRGEIVWN 444
           ++L     +TP+ G EL G    T+  G I + 
Sbjct: 394 KVLASQGKHTPFLGYELAGQVKTTIVAGHIAFQ 426


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,241,358
Number of extensions: 55989
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 387
Effective length of database: 899,382
Effective search space: 348060834
Effective search space used: 348060834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)