BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3671.p
         (322 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982634|ref|YP_001352837.1| transporter of the DMT superfam...    59   3e-10

>gi|152982634|ref|YP_001352837.1| transporter of the DMT superfamily
           [Janthinobacterium sp. Marseille]
          Length = 292

 Score = 59.3 bits (142), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 134/291 (46%), Gaps = 24/291 (8%)

Query: 23  QPMSRLFLLAVVLAICIWGGNWPVMKFGSQFIPPLWFAASRFLSAAI-LSFVIAAALGKL 81
            P   L  LA+V    IWG N+ V+K G Q + P+     RF  AA+ ++F I     + 
Sbjct: 2   SPTDILLALAIV---SIWGLNFVVIKIGLQDLSPIALTVLRFAFAALPMAFFIK----RP 54

Query: 82  RLPTRQEWPVVAGVGVLQMGL-FTALVTGALHFVMPGRASLIAYATSIWVVPGAALVLKH 140
            +P    W ++   G+ Q  L FT L TG    +  G ASL+      + +  A L +  
Sbjct: 55  AIP----WHLLCAFGLFQFALQFTFLFTGMHLGLSSGLASLVMQLQVFFTIALAILFVGE 110

Query: 141 KLSTQQSLATVCSYAGMAVIVLPALLHADMHSMIGYLMLGAASLSWAM-NILQIKLTPGV 199
           +    Q    + ++ GMA++   A       ++IG++++  AS+ WA  NI+  K+  G 
Sbjct: 111 RPRITQLTGALIAFCGMALV---AYKLESKATLIGFMLVIIASMCWATGNIVTKKI--GK 165

Query: 200 KLDFDLLPWQTLVAAVPLSLLALVVDGAPTFLANPH--SWGVIA---YTGPLATALTFLI 254
                L+ W +L++  PL + +L+++G   ++   H  +W   A   Y     T   F  
Sbjct: 166 VNPLALMIWGSLISLPPLLIASLLMEGTEGWVTAAHNMNWRAFATVLYQAYPNTMFAFGA 225

Query: 255 VLQMTQRLSPVTVSVCMLGVPVVGLTLSSLIFGEQLSGDLLLGMGLLCLGL 305
              + ++    TV+   L VP++G+  ++LI  E L    L   GL+  GL
Sbjct: 226 WAVLMRKYPAATVAPFTLLVPIIGMACAALILDEALQWWKLAACGLVLGGL 276


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 661,282
Number of extensions: 24864
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 3
Length of query: 322
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 239
Effective length of database: 914,170
Effective search space: 218486630
Effective search space used: 218486630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)