BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3670.p (301 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980095|ref|YP_001353263.1| LysR family transcriptional reg... 356 e-100 gi|152979810|ref|YP_001352746.1| LysR family transcriptional reg... 194 4e-51 gi|152981563|ref|YP_001352068.1| LysR family transcriptional reg... 190 8e-50 gi|152980272|ref|YP_001353541.1| LysR family transcriptional reg... 177 9e-46 gi|152980832|ref|YP_001354031.1| LysR family transcriptional reg... 175 3e-45 >gi|152980095|ref|YP_001353263.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 356 bits (914), Expect = e-100, Method: Compositional matrix adjust. Identities = 179/292 (61%), Positives = 223/292 (76%) Query: 3 RLEDLTIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTPDG 62 R+EDL +FV AAD G LSAAAR+ D+ PA ASAA+KRLE LGARL RSTRSLRLT DG Sbjct: 5 RIEDLMLFVRAADCGGLSAAARELDIAPAAASAALKRLEAALGARLFVRSTRSLRLTTDG 64 Query: 63 ERYLQYARNVLAEVNAGRDAVAHGRRVVGGTLSLSVPSDFGRNLMCQWLDEFQAQHPAVN 122 ERYL +AR VL V+ G +VA + +GG LSLS+PSD GRN+M WLDEFQAQHPA+ Sbjct: 65 ERYLVHARAVLLAVDEGAASVARDAQTIGGDLSLSIPSDLGRNVMLPWLDEFQAQHPAIR 124 Query: 123 LQVRISDRVADMFRQPVEVAIRYSPPEDSSLVALALAPDNRRVLCASPDYLARHGRPRSP 182 L++RISDR+AD++RQ ++VAIRY PEDS +VAL L PDNRRVLCASP Y RH P+ P Sbjct: 125 LRIRISDRLADLYRQTIDVAIRYGEPEDSGMVALPLVPDNRRVLCASPAYFKRHPLPKKP 184 Query: 183 ADLRQHNCLRYLLSDTLHSQWTFFKDGTPLQMQVSGDRVCDDGELVHRWAVDGRGIAYKS 242 +DL+ HNCLR++L D +H +W F+++ + V GDR+ DDG+LV RWA+ G G+AYKS Sbjct: 185 SDLQSHNCLRFVLGDAIHERWDFWRNKKMETVVVDGDRISDDGDLVRRWALAGNGLAYKS 244 Query: 243 RLDVLADLRNGRLEALLPDYVGEASPLNLVCTHRMSLSPTVRALRELLGERI 294 RLDV DL+ GRL A LP+Y GE +PLNLVC HR+ LSP V +LR+ L +R+ Sbjct: 245 RLDVSQDLKKGRLLAALPNYQGELAPLNLVCAHRLMLSPAVVSLRDFLRQRL 296 >gi|152979810|ref|YP_001352746.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 361 Score = 194 bits (494), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 112/289 (38%), Positives = 165/289 (57%), Gaps = 1/289 (0%) Query: 6 DLTIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTPDGERY 65 +L FV A G+LSAAAR D+TP A+ + +LE LG RL+ R+TRS+ LT +GE Y Sbjct: 64 ELEFFVLIARLGNLSAAARALDITPPAATKRLAQLESRLGVRLVNRTTRSISLTSEGEIY 123 Query: 66 LQYARNVLAEVNAGRDAVAHGRRVVGGTLSLSVPSDFGRNLMCQWLDEFQAQHPAVNLQV 125 L YA +LAEV DAV+ G G L ++ FGR + + EF ++P V +Q Sbjct: 124 LGYAARILAEVKEMEDAVSSGGGAPRGLLRVNATLGFGRTAIAPLVSEFVRRYPQVEVQF 183 Query: 126 RISDRVADMFRQPVEVAIRYSPPEDSSLVALALAPDNRRVLCASPDYLARHGRPRSPADL 185 +SD+ D+ ++AIR+ D+ L A L NRR LCASP YL RHG P++ ADL Sbjct: 184 EVSDKPIDLVENGFDLAIRFGTLPDTRLNARKLM-SNRRFLCASPIYLERHGTPQTLADL 242 Query: 186 RQHNCLRYLLSDTLHSQWTFFKDGTPLQMQVSGDRVCDDGELVHRWAVDGRGIAYKSRLD 245 +H C+ + +D + W F +DG ++V +DG++V WA+D GI +S D Sbjct: 243 SRHRCITHRQNDEAAATWRFTRDGRNEVIKVESALSSNDGDIVLGWALDAHGILIRSEWD 302 Query: 246 VLADLRNGRLEALLPDYVGEASPLNLVCTHRMSLSPTVRALRELLGERI 294 + +++GRL+ +LPDYV ++ L + +R + S RA + L E I Sbjct: 303 LAKYVKSGRLKIVLPDYVLPSADLFVYYPNRRNQSTRARAFIDFLIEHI 351 >gi|152981563|ref|YP_001352068.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 190 bits (483), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 97/262 (37%), Positives = 148/262 (56%), Gaps = 1/262 (0%) Query: 1 MIRLEDLTIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 60 M +L+ + FV A ++ S +AAA VTP + + LE LG RLL RSTR L LT Sbjct: 1 MDKLKQIEAFVMAVEHNSFAAAALALQVTPVMVGRRIDTLEKRLGVRLLHRSTRRLALTE 60 Query: 61 DGERYLQYARNVLAEVNAGRDAVAHGRRVVGGTLSLSVPSDFGRNLMCQWLDEFQAQHPA 120 +G YL++ R +L E+ A++ G V G L +S P+ FGR + + EF QHP Sbjct: 61 EGSVYLEHCRKMLNELEHAESALSAGHNKVTGHLIVSAPASFGRQHVAPYAQEFLEQHPG 120 Query: 121 VNLQVRISDRVADMFRQPVEVAIRYSPPEDSSLVALALAPDNRRVLCASPDYLARHGRPR 180 + + ++DRV D+ ++ ++ IR D + VA+ LA N+RV+C + +Y +HG+P+ Sbjct: 121 LKMSFNLTDRVVDLVQEGYDMGIRIGGNIDPNFVAIKLAA-NKRVVCGTREYFKKHGKPK 179 Query: 181 SPADLRQHNCLRYLLSDTLHSQWTFFKDGTPLQMQVSGDRVCDDGELVHRWAVDGRGIAY 240 + DL HNCL + L W F G + ++ G C+DGEL+HRW +G GIA+ Sbjct: 180 TLDDLANHNCLSFNLQGGQQRGWYFNYRGKTVSVRAQGSLDCNDGELLHRWMTEGLGIAW 239 Query: 241 KSRLDVLADLRNGRLEALLPDY 262 +S ++ L +G LE +L DY Sbjct: 240 RSVWEIQRQLESGMLETVLDDY 261 >gi|152980272|ref|YP_001353541.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 308 Score = 177 bits (448), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 103/287 (35%), Positives = 153/287 (53%), Gaps = 1/287 (0%) Query: 4 LEDLTIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTPDGE 63 + DL F GSL+AAA++ VTP S + +E L RLL R+TR + LTP+GE Sbjct: 4 ISDLAFFSLLVKRGSLAAAAQELGVTPPSVSKRLAGIESRLRVRLLNRTTRRISLTPEGE 63 Query: 64 RYLQYARNVLAEVNAGRDAVAHGRRVVGGTLSLSVPSDFGRNLMCQWLDEFQAQHPAVNL 123 YL ++AE+ A ++ G G L +S FGR + L F +P V + Sbjct: 64 IYLADGTRLVAELEALEQRISGGNITAKGLLKVSATFGFGRRHITPQLSAFARLYPEVEV 123 Query: 124 QVRISDRVADMFRQPVEVAIRYSPPEDSSLVALALAPDNRRVLCASPDYLARHGRPRSPA 183 Q+ ++DR ++ Q + IR+ D+ L A +A DNRR++CASP YL +HG P P Sbjct: 124 QLHLTDRPVNLVEQGFDADIRFGQIPDARLSARKIA-DNRRLVCASPAYLQKHGTPLVPR 182 Query: 184 DLRQHNCLRYLLSDTLHSQWTFFKDGTPLQMQVSGDRVCDDGELVHRWAVDGRGIAYKSR 243 DL+QHNC+ SD ++ W F ++V G +DGE WA+DG+GI +S Sbjct: 183 DLQQHNCILLRESDEIYGSWHFSSGIKQETVKVRGALSANDGECATSWALDGQGIVVRSE 242 Query: 244 LDVLADLRNGRLEALLPDYVGEASPLNLVCTHRMSLSPTVRALRELL 290 DV LR+GRL A+L ++ + + +V + LS RAL + + Sbjct: 243 WDVAPYLRSGRLRAVLEEWQLPQADIYIVFPTKNHLSAKTRALVDFM 289 >gi|152980832|ref|YP_001354031.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 175 bits (443), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 102/300 (34%), Positives = 158/300 (52%), Gaps = 1/300 (0%) Query: 1 MIRLEDLTIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 60 M L DL F GSL+A AR+ VTP + + LE LG RLL R+TR++ +T Sbjct: 1 MNDLSDLAFFSVLVKQGSLAAVARELGVTPPAVTKRLANLEQRLGVRLLNRTTRTMSVTH 60 Query: 61 DGERYLQYARNVLAEVNAGRDAVAHGRRVVGGTLSLSVPSDFGRNLMCQWLDEFQAQHPA 120 +GE YL +L E+ AV+ R V G L ++ FGR + + +F ++P Sbjct: 61 EGEIYLAEGARILTEIEELERAVSRSRAVPKGLLRINATFGFGRRHIAPAVSDFIEKYPE 120 Query: 121 VNLQVRISDRVADMFRQPVEVAIRYSPPEDSSLVALALAPDNRRVLCASPDYLARHGRPR 180 + +Q+++SDR A++ Q ++ IR D+ ++A +A NRR+LCA+P Y+ RHG P Sbjct: 121 IEVQLQLSDRPANLIDQAFDIGIRIGEMPDARIIARKIAA-NRRLLCAAPAYIKRHGTPS 179 Query: 181 SPADLRQHNCLRYLLSDTLHSQWTFFKDGTPLQMQVSGDRVCDDGELVHRWAVDGRGIAY 240 P DL++ C+ +D + W K ++V G +DGE WA+ G GI Sbjct: 180 VPRDLQKLQCIVLRENDAAYGSWHLHKGKRQESIKVRGALSSNDGETTLAWALAGHGILM 239 Query: 241 KSRLDVLADLRNGRLEALLPDYVGEASPLNLVCTHRMSLSPTVRALRELLGERIGRYLTD 300 +S+ DV A LR+GRL +L D+ S + V R++LS V A + + R L++ Sbjct: 240 RSQWDVAAYLRSGRLVEVLADWSLPPSDIYAVYPERLNLSAKVTAFVDFVSARFASRLSE 299 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 712,354 Number of extensions: 29335 Number of successful extensions: 143 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 101 Number of HSP's successfully gapped: 30 Length of query: 301 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 218 Effective length of database: 914,170 Effective search space: 199289060 Effective search space used: 199289060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)