BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3667.p
         (260 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981351|ref|YP_001352423.1| IclR family transcriptional reg...    82   5e-17
gi|152981479|ref|YP_001355355.1| IclR family transcriptional reg...    55   3e-09

>gi|152981351|ref|YP_001352423.1| IclR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 258

 Score = 81.6 bits (200), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 11/233 (4%)

Query: 4   QSPVDLDIQKRDLIEGLMKGFDVITAFNSDSPQLTASEVAERVGLTRSAARRYLLTLV-H 62
           ++  D D     +IE ++   D +  +      ++  E++   GL  S A R L  LV  
Sbjct: 2   KTAADTDKTSIQVIERMVALLDALALY---PDPVSLKELSSVTGLHPSTAHRILNDLVIK 58

Query: 63  TGMAASDGKKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIV 122
             +  S+   + L  RLL LG        V  A +  ++ L ++  ++ N S+   DEI+
Sbjct: 59  RFVDRSEPGTYRLGMRLLELGNIVKSRLDVREAALDLMRHLHRKTNQTVNLSVRQNDEII 118

Query: 123 YVTRV----TAAQLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVTLIPHTHM 178
           Y+ R     +  Q+V A    G R P + T+ G++ L + E   +QAY  R  L  H   
Sbjct: 119 YIDRAFSERSGMQVVRA---VGGRAPLHLTSTGKLFLSIDEPRMVQAYATRTGLAGHNKN 175

Query: 179 AMTDKAALFQEILTMRKQGYGITENQFEMGMRGIAIPVKNRSGRVIGALSVTS 231
           ++TD   L  E+  +R  GY     + E+G+R +A  + + +GR+I  LS+++
Sbjct: 176 SITDLKKLEGELNQVRLHGYARDNEELELGVRCMAAGIHDDTGRLIAGLSISA 228


>gi|152981479|ref|YP_001355355.1| IclR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 257

 Score = 55.5 bits (132), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 97/231 (41%), Gaps = 9/231 (3%)

Query: 10  DIQKRDLIEGLMKGFDVITAFNSDSPQ-LTASEVAERVGLTRSAARRYLLTLVHTGMAA- 67
           D+ KR+  + + +    +      +P  +   ++A  + L    A R L  LV  GM   
Sbjct: 3   DVLKREGSQSISRAIRAMKHIARHTPGGMRLVDLAREMELEHPTAHRMLKALVAEGMLVQ 62

Query: 68  -SDGKKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTR 126
            S  K++ L P +  LG +      +     P L+RL Q   +++   +  G++ + ++R
Sbjct: 63  LSGSKRYTLGPVMFELGLAATHQFNLRDICAPVLERLAQSTGDTSFLFVRSGNDAICLSR 122

Query: 127 VTAAQLVNAGFEP-GTRLPAYTTTAGRVLLGMREDAEIQAYLERVT--LIPHTHMAMTDK 183
           +     +     P G+R P   +  G  LL     AE +  L  V   L  + ++ + D 
Sbjct: 123 IQGNYPIQTPVVPVGSRQPLGVSAGGLALLSCLPKAEAEQILREVEPRLSVYENLDINDV 182

Query: 184 AALFQEILTMRKQGYGITENQFEMGMRGIAIPVKNRSGRVIGALSVTSNLA 234
              +       + GY    N    G+  + +P++N +G  + A++V + LA
Sbjct: 183 IDHYNRT---HELGYAWISNHAVPGVSALGLPIRNAAGTAVAAITVATTLA 230


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 555,392
Number of extensions: 21433
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 2
Length of query: 260
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 179
Effective length of database: 921,564
Effective search space: 164959956
Effective search space used: 164959956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)