BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3663.p (380 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Ma... 86 5e-18 gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinob... 79 5e-16 gi|152981716|ref|YP_001354197.1| porin [Janthinobacterium sp. Ma... 77 1e-15 gi|152981829|ref|YP_001355256.1| porin [Janthinobacterium sp. Ma... 68 7e-13 gi|152981865|ref|YP_001352985.1| porin [Janthinobacterium sp. Ma... 67 1e-12 >gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Marseille] Length = 327 Score = 85.5 bits (210), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 64/194 (32%), Positives = 96/194 (49%), Gaps = 6/194 (3%) Query: 7 RTPVAMGLLLAASGTALAQSASNVTLYGTVDQYLGYMRSSSGKSLWALNDGAILRSRIGL 66 +T A +L + +G QS+ VT+YG VD L + +G ++ ++ G SR+G Sbjct: 3 KTLFAFSMLASMAGATYGQSS--VTVYGVVDLGLKIENAGNG-TVTGIDSGNQSVSRVGF 59 Query: 67 KGYEDLGAGYAATFTLENGFSGDTGGLADSSRLFDRQSWVGIKTPAAGEFRIGRQNSVPF 126 KG EDLG G A F LE GF+ D+G +D++R F+RQS+V + GE ++GR ++ F Sbjct: 60 KGTEDLGNGLKANFVLEAGFNADSGSQSDATRFFNRQSYVSL-AGGFGEVKLGRVQTMVF 118 Query: 127 FIGGAIDYTERTTYGSIINTFGV-PSRFDNDLSWKSPRWAGIQFDLHYAMPETAGEGLGR 185 D T G + F +R DN +++ GI Y+ E AG Sbjct: 119 TNSAVFDPFADTLAGDSVRIFNYGGNRIDNTVNYSFAAKNGINGQAAYSFGEVAGNTSAS 178 Query: 186 RGVYQLGVDYTSGP 199 R V + Y SGP Sbjct: 179 RTVAG-AIGYASGP 191 >gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinobacterium sp. Marseille] Length = 364 Score = 79.0 bits (193), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 117/412 (28%), Positives = 170/412 (41%), Gaps = 88/412 (21%) Query: 7 RTPVAMGLLLAASGTALAQSASNVTLYGTVDQYLGYMRSSSGK---SLWALNDGAILRSR 63 ++ +A+ +L A +G A AQS+ VT+YG VD LG+ G S ++ G SR Sbjct: 3 KSLLALAVLGAFAGAASAQSS--VTVYGIVD--LGFAHVDDGNPAGSKNGIDSGGQSASR 58 Query: 64 IGLKGYEDLGAGYAATFTLENGFS---------------GDTGGLADSSRLFDRQSWVGI 108 IG KG EDLG G A F LE G G+A+++ F+R + VG+ Sbjct: 59 IGFKGTEDLGNGLKALFQLEATLQADTGAGFGAAAAPATGFNAGVANNAGGFNRFATVGL 118 Query: 109 KTPAAGEFRIGRQNSV---------PFFIGGAIDYTERTTYGSIINTFGVPSRFDNDLSW 159 ++ A G +GRQ SV PF GG + + ++ G R N + Sbjct: 119 QSAAFGTVLLGRQTSVIKDAYDQIDPFGDGGTVGAISTVFFNGVLA--GDYGRISNSAKY 176 Query: 160 KSPRWAGIQFDLHYAMPETAGEGLGRRGVYQLGVDYTSGPYRAGYA------GLMAKPNA 213 +S + G +F Y ET G+ G Y LG+ Y +GP +A +A P Sbjct: 177 QSNSFGGFKFGAAYGFGETPGD-TGANSNYGLGLGYANGPLNVQFAYHNQDRSTVANP-- 233 Query: 214 GGRYDNTVQYHN-----VYADYDYGPGKIYLAYVRSNNTTANANGNNAATILNNVSNPNN 268 +VQ + A YD+G K++ AY + + N+V+ Sbjct: 234 ------SVQQAEGKLMLLGATYDFGVVKLHGAYGDTK-------------LENSVA---- 270 Query: 269 FFAGNDPNIQRFYNVYQISADYRLTPQLRIGALYGVMVDTSHKEGGAQGGNIGAYYDLSK 328 N + Y Y + + P I A Y + S A+ I YDLSK Sbjct: 271 -------NTEVKYRNYMLGVSAPVGPG-TIFASYTANDNRSVDNADAKKFAISYSYDLSK 322 Query: 329 RTTLYGFANYMKNQANAGWRFSGSAGPGSNLAGADINGKSLVGLQMGILHRF 380 RT LY Y K + G R G N AGA + G+S +GI H+F Sbjct: 323 RTNLY--TGYSKTSNDDGSRI------GLN-AGAPV-GESASIFNVGIRHKF 364 >gi|152981716|ref|YP_001354197.1| porin [Janthinobacterium sp. Marseille] Length = 326 Score = 77.4 bits (189), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 24/253 (9%) Query: 13 GLLLAA---SGTALAQSASNVTLYGTVDQYLGYMRSSSGKSLWALNDGAILRSRIGLKGY 69 GL LAA GTA +Q+ S+V +YG +D L Y + + + +G + S +GLKG Sbjct: 8 GLALAAMLACGTA-SQAQSSVQVYGLIDVALAYDKQPGKAGVTGVENGKMTTSYLGLKGS 66 Query: 70 EDLGAGYAATFTLENGFSGDTG--GLADSSRLFDRQSWVGIKTPAAGEFRIGRQNSVPFF 127 EDLG G + F LE+ F DTG G D + R S+VG++ G R+GR NSVP F Sbjct: 67 EDLGGGLSTIFALESYFRADTGSNGRFDGDGFWTRSSYVGLQG-RFGSVRLGR-NSVPLF 124 Query: 128 I--------GGAIDYTERTTYGSIINTFGVPSRFDNDLSWKSPRWAGIQFDLHYAMPETA 179 I G + Y+ + T S + + +++ SP ++G+ +L A A Sbjct: 125 ISTLLFNPFGDSFGYSPSIRHYFASGTVTGDSGWSDSIAYVSPNFSGLTVNLIAA----A 180 Query: 180 GEGLGRRGVYQLGVDYTSGPYRAGYAGLMAKPNAGGRYDNTVQYHNVYADYDYGPGKIYL 239 GEG G V V YT GP G + + G +T + + + YD+ K++ Sbjct: 181 GEGNGGPNVGG-SVLYTKGPL--GLTAVYQRVRKGAAIADTTTWQ-LGSSYDFDVVKVFA 236 Query: 240 AYVRSNNTTANAN 252 Y + N +A + Sbjct: 237 QYGQVKNVSAQPD 249 >gi|152981829|ref|YP_001355256.1| porin [Janthinobacterium sp. Marseille] Length = 363 Score = 68.2 bits (165), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 101/194 (52%), Gaps = 20/194 (10%) Query: 6 LRTPVAMGLLLAASG---TALAQSASNVTLYGTVDQYLGYMRSSSGKSLWA-LNDGAILR 61 +++ + +LL AS ++L+++ S+VT+ G D ++G MR+S + + ++ G + Sbjct: 1 MKSKILFSVLLTASILSYSSLSRAQSSVTMEGIADGFMGSMRNSGDAARTSKVDSGGLST 60 Query: 62 SRIGLKGYEDLGAGYAATFTLENGFSGDTG--GLADSSRLFDRQSWVGIKTPAAGEFRIG 119 S IG KG+EDLG G A+FTL + D G G F R + V + + + G+ +G Sbjct: 61 SYIGFKGFEDLGGGLKASFTLGAFYRIDDGAYGRFGGDTFFARDANVAL-SGSFGKLMLG 119 Query: 120 RQ---NSVPFFIGGAID-------YTERTTYGSII--NTFG-VPSRFDNDLSWKSPRWAG 166 R ++P ++ ++ T G+ + TFG S + N +++ SP +AG Sbjct: 120 RMTPPTTLPLYMFNPVEDSFSLSPLVLHTIVGTNVFPGTFGRTDSAWSNSIAYTSPTFAG 179 Query: 167 IQFDLHYAMPETAG 180 + F+LHY E AG Sbjct: 180 LTFNLHYQFGEAAG 193 >gi|152981865|ref|YP_001352985.1| porin [Janthinobacterium sp. Marseille] Length = 413 Score = 67.4 bits (163), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 91/351 (25%), Positives = 147/351 (41%), Gaps = 47/351 (13%) Query: 62 SRIGLKGYEDLGAGYAATFTLENGFSGDTGGLADSSRLFDRQSWVGIKTPAAGEFRIGRQ 121 S IG +G E +G G A F LE DTG + F R+++VG++ GE ++G+ Sbjct: 78 SYIGFRGSEKIGDGLTAMFQLEASIGIDTGAQSSPDIFFSRETFVGLEG-GLGEIKMGKL 136 Query: 122 NSVPFFIGGAIDY----TERTTYGSII---NTFGVPS--RFD----NDLSWKSPRWAGIQ 168 ++V +G + + + GS I N FG S RF N + + +P +G Q Sbjct: 137 DTVYKSLGDTLSFGGVSSGNFVSGSNIMSKNGFGTNSAHRFHERPANTVMYTTPEVSGFQ 196 Query: 169 FDLHYAMPETAGEGLGRRGVYQLGVDYTSGPYRAGYAGLMAKPNAGGRYDNTVQYHNVYA 228 L Y+ E + R + G+ Y +GP+ A + G + N+ Sbjct: 197 GLLGYSFGEIP-DDRSRGNIISAGITYKAGPWYVALANEQHENFYGASRNLPAALRNITG 255 Query: 229 DYDYGPGKIYLAYVRSNNTTANANG-----NNAATILNNVSNPNNFFAGNDPNIQRF--- 280 G G I + S +T A +N LN V A + + RF Sbjct: 256 --GTGAGFIRVPGTSSKDTATRATAQYQFTSNTRAELNLVRMK---LAESGGAVGRFKSY 310 Query: 281 -YNVYQISADYRLTPQLRIGALYGVMVDTSHKEGGAQGGN----------IGAYYDLSKR 329 +N + ++A++++ +G+ YG + GA N +G +Y LSKR Sbjct: 311 THNAWLLTAEHKMNAWAVVGS-YGQASAGECELVGAGNCNTDGLNASMLSMGVFYTLSKR 369 Query: 330 TTLYGFANYMKNQANAGWRFSGSAGPGSNLAGADINGKSLVGLQMGILHRF 380 T LY + M+N +A + +G A P G++L L +GI HRF Sbjct: 370 TQLYSLFSRMRNGHSANYSNAGDAQPPG-------VGQNLTQLALGISHRF 413 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 959,024 Number of extensions: 44439 Number of successful extensions: 155 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 8 Length of query: 380 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 295 Effective length of database: 906,776 Effective search space: 267498920 Effective search space used: 267498920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)