BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3662.p (465 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Jan... 236 2e-63 gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Jan... 236 2e-63 gi|152982376|ref|YP_001354943.1| major facilitator transporter [... 206 2e-54 gi|152982732|ref|YP_001353683.1| major facilitator transporter [... 166 3e-42 gi|152980800|ref|YP_001354171.1| major facilitator superfamily s... 155 5e-39 >gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 439 Score = 236 bits (603), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 148/400 (37%), Positives = 222/400 (55%), Gaps = 12/400 (3%) Query: 2 QSSHTNDHTQQSKKAAASGWIGSALEYYDFFIYATAASLIFPQLFFPKGDPTTAIIASLA 61 + + Q+ + + IG+ +E+YDF IY AA+L+F +LFFP DP +A+L Sbjct: 10 STVNPRAEKQKIRSVVFASAIGTIIEWYDFLIYGMAAALVFNKLFFPNIDPLLGTLAALG 69 Query: 62 TYGVGYVARPIGAFVLGHLGDTHGRKKVLLWCMFLMGFSTIGVGLLPTYDQVGLWAPALL 121 +Y VG++ARP+G + GH GD GRK +L+ + LMG T +GLLPTY Q+G+WAP LL Sbjct: 70 SYAVGFLARPLGGAIFGHYGDRIGRKSILMITLALMGIGTFLIGLLPTYGQIGIWAPILL 129 Query: 122 VLLRLAQGFAVAGEISGASSMILEHSPFGRRGYYSSFALQGVQAGQILAAAVFLPLAHYM 181 + LR+ QG + GE GA+ M+LEHSP RRG+Y S G G ++A VF M Sbjct: 130 ITLRIIQGIGLGGEWGGAAVMVLEHSPKNRRGFYGSLVQVGFPLGLVIATLVF-SFVSKM 188 Query: 182 PTEQFNVWGWRIPFLLSFLVIIVCWIIRRKVDETPVFKAADQQELKRRSPVVEAFRDCTP 241 P WGWRIPFLLS ++IIV IR+ V+E+PVF+ ++ +SPV++ Sbjct: 189 PEADILSWGWRIPFLLSAVLIIVGIFIRKNVEESPVFEDMKMRKALSKSPVMDVILKHPR 248 Query: 242 NMLRVVCMALMNVIPV-VATIFGAAYAVQPAYGVGFAKDVYLWIPVVGNIVAVLVIPYVG 300 + + + V V + T+F YA +G K + L ++ +V ++ IP G Sbjct: 249 TFFIAIGLKISEVSWVYMLTVFMVVYATTT---LGLPKSLILEAILIAAMVEIVTIPLFG 305 Query: 301 KLSDRIGRRLPIVVGSLLAGLFAFAYLYAISIRNVELAFVMSILMWGVVYQGYNAVF--- 357 LSD IGRR +G+L FAF + +R E A ++++++ + G+ +F Sbjct: 306 YLSDVIGRRPLYFIGALFTIAFAFPLFLFMEMRTPE-AVILTVVV--AMSMGHGLMFAPE 362 Query: 358 PSFFPELFPARARVSAMAIGQNLGTAITAML-PALFTAVA 396 ++FPELF A R S + G + AI L P + TA+A Sbjct: 363 ATYFPELFGANVRYSGASFGFQVAAAIGGGLSPIIATALA 402 >gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 437 Score = 236 bits (602), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 158/447 (35%), Positives = 234/447 (52%), Gaps = 30/447 (6%) Query: 1 MQSSHTNDHTQQSKKA--------AASGWIGSALEYYDFFIYATAASLIFPQLFFPKGDP 52 M+ S + D + S+ AA+ IG+ +E+YDF IY AA+L+F +LFFP P Sbjct: 1 MEISTSGDVSVASRGVKKSKIGTIAAASSIGTIIEWYDFLIYGMAAALVFNKLFFPNVSP 60 Query: 53 TTAIIASLATYGVGYVARPIGAFVLGHLGDTHGRKKVLLWCMFLMGFSTIGVGLLPTYDQ 112 +A+L TY VG+ ARP+G + GH GD GRK +LL MF+MG T+ +G LPTY+ Sbjct: 61 VIGTLAALGTYAVGFFARPLGGAIFGHFGDRVGRKSMLLLTMFIMGIGTVLIGCLPTYEH 120 Query: 113 VGLWAPALLVLLRLAQGFAVAGEISGASSMILEHSPFGRRGYYSSFALQGVQAGQILAAA 172 +G+WAP LL++LR QG + GE GA+ M+LEH+P RRG+Y S G G +LA Sbjct: 121 IGIWAPVLLIVLRFIQGVGLGGEWGGAALMVLEHAPKHRRGFYGSLVQVGFPLGLVLATG 180 Query: 173 VFLPLAHYMPTEQFNVWGWRIPFLLSFLVIIVCWIIRRKVDETPVFKAADQQELKRRSPV 232 VF + +P F WGWRIPFLLS ++++V ++IR KV+E+P+F + + PV Sbjct: 181 VF-AIVSKLPEADFLSWGWRIPFLLSIVLVVVGYVIRSKVEESPIFLQMKAKNELSKQPV 239 Query: 233 VEAFRDCTPNMLRVVCMALMNVIPV-VATIFGAAYAVQPAYGVGFAKDVYLWIPVVGNIV 291 ++A L + + + V V + T+F +A + K + L + +V Sbjct: 240 LDAILKNPRAFLTAIGLKISEVSWVYILTVFIVVHATN---NLQLPKSLILDGILYAALV 296 Query: 292 AVLVIPYVGKLSDRIGRRLPIVVGSLLAGLFAFAYLYAISIRNVELAFVMSILMWGVVYQ 351 V+ IP G LSD++GRR + G+L AF + R+ + + I+ + + Sbjct: 297 EVITIPLFGLLSDKVGRRPMYIWGALFTVALAFPLFILLDTRDSAIIIGVMIVALSLGHG 356 Query: 352 GYNAVFPSFFPELFPARARVS--------AMAIGQNLGTAITAMLPALFTAVAPPGASHI 403 A ++FPELF A R S A AIG L I L A F G S + Sbjct: 357 FMFAPEATYFPELFGANVRYSGATLGFQVAAAIGGGLSPIIATGLMAYFGGTT--GVSVM 414 Query: 404 WLTVGSIAFGITIVAALAAMSARETHR 430 + + +I +AA+SARET Sbjct: 415 LILLAAITL-------VAAISARETRH 434 >gi|152982376|ref|YP_001354943.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 439 Score = 206 bits (525), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 129/392 (32%), Positives = 209/392 (53%), Gaps = 17/392 (4%) Query: 7 NDHTQQSKKAAA------SGWIGSALEYYDFFIYATAASLIFPQLFFPKGDPTTAIIASL 60 ND S+K + + IG+ +E++DF+IYATAA L+FP LFFP +PT ++ SL Sbjct: 2 NDRNAGSEKKNSPATVLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPSSNPTAGMLQSL 61 Query: 61 ATYGVGYVARPIGAFVLGHLGDTHGRKKVLLWCMFLMGFSTIGVGLLPTYDQVGLWAPAL 120 AT+ + + ARP+G+ V GH GD GRK L+ + MG ST+ +GLLPTY+ +G AP L Sbjct: 62 ATFAIAFFARPVGSAVFGHYGDRIGRKATLVAALLTMGISTVVIGLLPTYEAIGTLAPLL 121 Query: 121 LVLLRLAQGFAVAGEISGASSMILEHSPFGRRGYYSSFALQGVQAGQILAAAVFLPLAHY 180 L L R QG + GE GA + E++P G+ +Y F G G L+ +FL L+ Sbjct: 122 LALCRFGQGLGLGGEWGGAVLLATENAPPGKIAWYGCFPQLGAPLGFFLSGGIFLLLSET 181 Query: 181 MPTEQFNVWGWRIPFLLSFLVIIVCWIIRRKVDETPVFKAADQQELKRRSPVVEAFRDCT 240 + EQF +GWRIPF+ S ++++V +R K+ ETPVF+ + + + P+ FR+ + Sbjct: 182 LTNEQFFSYGWRIPFIASAVLVLVGLYVRLKITETPVFQKVLDKNERVKVPIATIFREHS 241 Query: 241 PNMLRVVCMALMN-VIPVVATIFGAAYAVQPAYGVGFAKDVYLWIPVVGNIVAVLVIPYV 299 ++ +A V+ + T+F ++ G+G+ + +L + + + L IP Sbjct: 242 RVLVLGTIIATATFVLFYLMTVFALSWGTT---GLGYTRKEFLILQLFAVVFFALTIPIS 298 Query: 300 GKLSDRIGRRLPIVVGSLLAGLFAFA---YLYAISIRNVELAFVMSILMWGVVYQGYNAV 356 L+D+ GRR+ +++ S+ LF F A V + + + G+ Y Sbjct: 299 ALLADKYGRRITMILVSIAIMLFGFLISPMFVAHDAIGVTFFLSLGLALMGMTYGPLG-- 356 Query: 357 FPSFFPELFPARARVSAMAIGQNLGTAITAML 388 + ELFP R + +++ NLG + A L Sbjct: 357 --TMLSELFPTEIRYTGVSLTFNLGGIVGASL 386 >gi|152982732|ref|YP_001353683.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 553 Score = 166 bits (420), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 120/342 (35%), Positives = 185/342 (54%), Gaps = 20/342 (5%) Query: 1 MQSSHTNDH--TQQSKKAAASGWIGSALEYYDFFIYATAASLIFPQLFFPKGDPTTAIIA 58 M + T D T + +K + +G+ E+YDF++Y + A++I Q FF DP TA I Sbjct: 1 MATVSTTDRSITPEERKVIFASSLGTVFEWYDFYLYGSLAAIIAKQ-FFAGTDPNTAFIF 59 Query: 59 SLATYGVGYVARPIGAFVLGHLGDTHGRKKVLLWCMFLMGFSTIGVGLLPTYDQVGLWAP 118 +L + G++ RP GA V G LGD GRK L + +MG ST VGLLP Y +G+ AP Sbjct: 60 ALLAFAAGFIVRPFGAIVFGRLGDMIGRKYTFLVTIVIMGTSTFIVGLLPNYASIGIAAP 119 Query: 119 ALLVLLRLAQGFAVAGEISGASSMILEHSPFGRRGYYSSFALQGVQAGQILAAAVFLPLA 178 +L++LR+ QG A+ GE GA++ + EH+P G+RG ++S+ G ++ V L Sbjct: 120 IILIILRILQGLALGGEYGGAATYVAEHAPHGKRGAFTSWIQTTATMGLFMSLLVILGTR 179 Query: 179 HYMPTEQFNVWGWRIPFLLS-FLVIIVCWIIRRKVDETPVFKAADQQELKRRSPVVEAFR 237 M E F WGWRIPFL+S FL+ I W IR ++E+P F + ++P+ EAF Sbjct: 180 TAMGEEAFADWGWRIPFLVSVFLLGISVW-IRLSMNESPAFLKMKSEGKASKAPLTEAFA 238 Query: 238 DCTPNMLRVVCMALMNVIPVVATIF--GAAYAVQPAYGVGFAKDVYLWIPVVGNIVA--- 292 L++V +AL+ + A ++ G YA+ + + + P ++A Sbjct: 239 KW--GNLKIVILALIGLTAGQAVVWYTGQFYAL-----FFLTQTLKVDGPTANILIAASL 291 Query: 293 VLVIPY---VGKLSDRIGRRLPIVVGSLLAGLFAFAYLYAIS 331 +L P+ G LSD+IGR+ I+ G L+A L F A++ Sbjct: 292 LLATPFFVIFGSLSDKIGRKPIIMAGCLIAALTYFPIFNALT 333 >gi|152980800|ref|YP_001354171.1| major facilitator superfamily sugar transporter [Janthinobacterium sp. Marseille] Length = 544 Score = 155 bits (392), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 112/319 (35%), Positives = 165/319 (51%), Gaps = 16/319 (5%) Query: 11 QQSKKAAASGWIGSALEYYDFFIYATAASLIFPQLFFPKGDPTTAIIASLATYGVGYVAR 70 ++ ++ + +G+ E+YDFFIY + A + + FP +PT A++ASL G+V R Sbjct: 17 KEERQVVLASTLGTIFEWYDFFIYGSLA-IFMSSVLFPPDNPTAALLASLGALAAGFVIR 75 Query: 71 PIGAFVLGHLGDTHGRKKVLLWCMFLMGFSTIGVGLLPTYDQVGLWAPALLVLLRLAQGF 130 PIGA + G+LGD GRK L + +MG ST +G LP+Y VG A LV+LRL QG Sbjct: 76 PIGAVLFGYLGDRLGRKHTFLLTIIMMGGSTALIGFLPSYASVGHAAWISLVVLRLVQGL 135 Query: 131 AVAGEISGASSMILEHSPFGRRGYYSSFALQGVQAGQILAAAVFLPLAHYMPTEQFNVWG 190 AV GE GA + EHS RRG + + G IL+ AV L M F WG Sbjct: 136 AVGGEYGGAVIYVAEHSRPSRRGLLTGWIQITSSMGLILSIAVILGTQATMDMASFKEWG 195 Query: 191 WRIPFLLSFLVIIVCWIIRRKVDETPVFKAADQQELKRRSPVVEAFRDCTPNMLRVVCMA 250 WR+PF++S ++I +R K+ E+PVF Q ++PV + F P+ L+++ +A Sbjct: 196 WRVPFIISIAMLIFSVYVRAKLHESPVFTRLKAQGRLSKNPVRDTFFKW-PS-LKMILLA 253 Query: 251 LMNVIPVVATIFGAAYAVQPAYGVGF--------AKDVYLWIPVVGNIVAVLVIPYVGKL 302 L V GA Y Y + F + VY I +G ++ + G L Sbjct: 254 LFGVTAGQ----GATYFTGQFYVMIFLQQAVMLDQRTVYTLI-CIGFLIGAPAFVFFGWL 308 Query: 303 SDRIGRRLPIVVGSLLAGL 321 SDR+GR+ ++ G +A L Sbjct: 309 SDRLGRKWIMMAGLFIAAL 327 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.140 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,030,801 Number of extensions: 41185 Number of successful extensions: 224 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 213 Number of HSP's successfully gapped: 6 Length of query: 465 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 378 Effective length of database: 899,382 Effective search space: 339966396 Effective search space used: 339966396 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)