BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3660.p
         (131 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982726|ref|YP_001353786.1| chemotaxis protein CheY [Janthi...    60   6e-11
gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein [Janthi...    58   2e-10
gi|152982173|ref|YP_001354646.1| PilG twitching motility two-com...    55   1e-09

>gi|152982726|ref|YP_001353786.1| chemotaxis protein CheY
           [Janthinobacterium sp. Marseille]
          Length = 121

 Score = 59.7 bits (143), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 3/116 (2%)

Query: 15  LLIVDDEIDITDTYAMLLELHGYRVVSAIHGADALTKAQQQWPDLVISDCMMPVMNGLEL 74
           +L VDD   +       L   GY+V  A+ G D L KA+ Q  DLV++D  MP M+G  L
Sbjct: 5   ILAVDDSGSLRQMVVFSLRAAGYQVTEAVDGQDGLDKAKTQVFDLVLTDQNMPRMDGFSL 64

Query: 75  CAALRALPGGPALPIILC---SGAPERHDLSQSSHNLFLRKPVFFERLLQEIQRLL 127
             ALRAL     +PI++    S    +     +  N +L KP   +RL + +++++
Sbjct: 65  IRALRALSTYQKIPILVLTTESSDEMKAKGRAAGANGWLVKPFDPQRLTEVVKKVI 120


>gi|152980535|ref|YP_001351704.1| CheA chemotaxis protein
           [Janthinobacterium sp. Marseille]
          Length = 756

 Score = 57.8 bits (138), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 15  LLIVDDEIDITDTYAMLLELHGYRVVSAIHGADALTKAQQQWPDLVISDCMMPVMNGLEL 74
           +L+VDD + + +    LL   GY+VV A+ G D     + +  DLVI+D  MP M+G+EL
Sbjct: 637 VLVVDDSLTVRELERKLLSNCGYQVVVAVDGMDGWNAVRTEHFDLVITDIDMPRMDGIEL 696

Query: 75  CAALRALPGGPALPIILCSGAPERHD----LSQSSHNLFLRKPVFFERLLQEIQRLL 127
            + +R      +LP+++ S      D    L   +   F +     E LLQ +  L+
Sbjct: 697 VSLIRQAANLQSLPVMIVSYKDREEDRQRGLDAGADYYFTKSSFHDESLLQAVVDLI 753


>gi|152982173|ref|YP_001354646.1| PilG twitching motility
           two-component system response regulator
           [Janthinobacterium sp. Marseille]
          Length = 133

 Score = 55.1 bits (131), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 3/113 (2%)

Query: 15  LLIVDDEIDITDTYAMLLELHGYRVVSAIHGADALTKAQQQWPDLVISDCMMPVMNGLEL 74
           ++++DD   I  +  + L   GY+VV A  G DAL K     P L+  D +MP ++G + 
Sbjct: 12  IMVIDDSSTIRRSAEIFLGQAGYKVVLADDGFDALAKMNDHRPALIFCDILMPRLDGYQT 71

Query: 75  CAALRALPGGPALPIILCS---GAPERHDLSQSSHNLFLRKPVFFERLLQEIQ 124
           CA ++      + P+I+ S   G  +R   +    + +L KP   + LL+ ++
Sbjct: 72  CALIKKSAKFHSTPVIMLSSKDGLFDRARGAMVGSDAYLTKPFTKDSLLKTVR 124


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 259,179
Number of extensions: 7806
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 3
Length of query: 131
Length of database: 1,221,021
Length adjustment: 73
Effective length of query: 58
Effective length of database: 951,140
Effective search space: 55166120
Effective search space used: 55166120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 124 (52.4 bits)