BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3658.p (236 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981636|ref|YP_001354511.1| two-components system response ... 85 5e-18 gi|152981350|ref|YP_001354553.1| two-components system response ... 77 7e-16 gi|152980160|ref|YP_001353976.1| phosphate regulon two-component... 71 8e-14 gi|152981322|ref|YP_001355016.1| two components system response ... 70 1e-13 gi|152981323|ref|YP_001354612.1| two components system response ... 70 1e-13 >gi|152981636|ref|YP_001354511.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 220 Score = 84.7 bits (208), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 104/220 (47%), Gaps = 11/220 (5%) Query: 2 KVLIVESDLDWRNTLSTHVGELGYEISVCSSLGQARDILRCRQPDMLLSDIGLPDGSLSP 61 K+L++E ++D+R ++ + G+++ S + ++ + D+ L D+GLPD Sbjct: 3 KLLLLEDEVDYRQEIADFLRSEGHQVLEAGSAAEFTPLMD--EMDIALIDVGLPDADGFE 60 Query: 62 ELASLRQHFPSMGIVILTAATRSEERLRCMSDGADYYLVKPVKLDEVSATLTALARRMKT 121 A LR+H GI++LTA ++ + GAD+YLVKPV+ DE+ A + AL RRM Sbjct: 61 LAALLRKHRNKCGIIMLTAQGGINHKIASLRGGADHYLVKPVRYDELLAHIKALERRMGL 120 Query: 122 APHQSSPQSEKWAFNRKSGRLSSNGKVALQFTDKESTALAALLQSPNYPVSHTQLFDLLR 181 W + +L + A +D E L VS + + Sbjct: 121 G---------GWRLDTLERKLYAPNGHAEALSDHELKLFELLAAQSGQAVSRRTIANAFG 171 Query: 182 SGGEEYDAHRIDALIYRVRQKLRSLPEAPMQIRNIYGEGF 221 + +YD R++ ++ R+R++ R + R +G+G+ Sbjct: 172 ADWLDYDERRLEQIVSRLRRRWRENCPEELPFRTEHGKGY 211 >gi|152981350|ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 233 Score = 77.4 bits (189), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 5/223 (2%) Query: 1 MKVLIVESDLDWRNTLSTHVGELGYEISVCSSLGQARDILRCRQPDMLLSDIGLPDGSLS 60 M++L+ E D + L+ + + GY + +A +L + D+L+ D+GLP S Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYATDCVKNGAEADSVLSTQDFDLLILDLGLPKMSGL 60 Query: 61 PELASLRQHFPSMGIVILTAATRSEERLRCMSDGADYYLVKPVKLDEVSATLTALARRMK 120 L LR + ++ILTA E+R++ + GAD ++ KP L E+ A + AL RR Sbjct: 61 EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRR-G 119 Query: 121 TAPHQSSPQSEKWAFNRKSGRLSSNGKVALQFTDKESTALAALLQSPNYPVSHTQLFDLL 180 + + +++ + GR++ L + +E L LLQ VS QL D L Sbjct: 120 AGGGPTVIKHGPLSYD-QVGRIAYINDQMLDLSARELGLLEVLLQRSGRLVSKEQLVDHL 178 Query: 181 RSGGEEYDAHRIDALIYRVRQKLRSLPEAPMQIRNIYGEGFLM 223 EE + I+ ++R+R+K+ ++I + G G+ + Sbjct: 179 CEWSEEVSNNAIEVYVHRLRKKIEI---GGLRIATVRGLGYCL 218 >gi|152980160|ref|YP_001353976.1| phosphate regulon two-component response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 70.9 bits (172), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 109/224 (48%), Gaps = 8/224 (3%) Query: 3 VLIVESDLDWRNTLSTHVGELGYEISVCSSLGQARDILRCRQPDMLLSDIGLPDGSLSPE 62 +LIVE + ++ + G+ ++ + G A D ++ R P ++L D LPD S Sbjct: 8 ILIVEDEPPIIELVTFTLKGAGWNVAAVQNAGDAWDFIQQRLPQLILLDWMLPDQSGLRL 67 Query: 63 LASLR--QHFPSMGIVILTAATRSEERLRCMSDGADYYLVKPVKLDEVSATLTALARRMK 120 L+ +R + F + I++LTA + E+++ + +GAD Y+ KP E++A + AL RR K Sbjct: 68 LSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRR-K 126 Query: 121 TAPH-QSSPQSEKWAFNRKSGRLSSNGKVALQFTDKESTALAALLQSPNYPVSHTQLFDL 179 T H Q+ + + + S +S N + + E L L P+ S +QL D Sbjct: 127 TPEHSQTLMTAGNISLDPVSCSVSMNDE-KIDIGHAEFKLLKFFLAHPDRVFSRSQLLDK 185 Query: 180 LRSGGEEYDAHRIDALIYRVRQKLRSLPEAPMQIRNIYGEGFLM 223 + + +D + R+R+ L+ +A I+ + G+++ Sbjct: 186 VWGDHVVIEERTVDVHVLRLRKALK---DAEHLIKTVRSVGYML 226 >gi|152981322|ref|YP_001355016.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 70.1 bits (170), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 108/231 (46%), Gaps = 12/231 (5%) Query: 3 VLIVESDLDWRNTLSTHVGELGYEISVCSSLGQARDILRCRQPDMLLSDIGLP--DG-SL 59 +LIV+ D + R L++++ + G S+ ++ Q R +L D+++ D+ LP DG +L Sbjct: 7 ILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDGLTL 66 Query: 60 SPELASLRQHFPSMGIVILTAATRSEERLRCMSDGADYYLVKPVKLDEVSATLTALARRM 119 EL + + ++ +++LTA +R+ + GAD YL KP + E+ A + ++ RR Sbjct: 67 CRELRA--GKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRA 124 Query: 120 KTAPHQ---SSPQS----EKWAFNRKSGRLSSNGKVALQFTDKESTALAALLQSPNYPVS 172 + P S P W + + L + + E L L P ++ Sbjct: 125 RMLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQRVLT 184 Query: 173 HTQLFDLLRSGGEEYDAHRIDALIYRVRQKLRSLPEAPMQIRNIYGEGFLM 223 QL +L + + ID LI R+RQ+L+ P I+ + EG++ Sbjct: 185 RDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVF 235 >gi|152981323|ref|YP_001354612.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 69.7 bits (169), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 5/229 (2%) Query: 1 MKVLIVESDLDWRNTLSTHVGELGYEISVCSSLGQARDILRCRQPDMLLSDIGLPDGSLS 60 M++LIVE D L+ + + GY + + A L +LL DI LP Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYSVDHVDNGEDAHRALANDIYALLLLDISLPKMDGL 60 Query: 61 PELASLRQHFPSMGIVILTAATRSEERLRCMSDGADYYLVKPVKLDEVSATLTALARRMK 120 L LR+ + ++ILTA ++R+ + GAD Y+ KP L E A + AL RR + Sbjct: 61 AVLRRLRERKSRLPVLILTARDTLDDRVAGLDLGADDYMTKPFDLPEFEARVRALIRRGQ 120 Query: 121 TAPHQSSPQSEKWAFNRKSGRLSSNGKVALQFTDKESTALAALLQSPNYPVSHTQLFDLL 180 + F+ ++ RL N + ++ + +E LL V+ Q+ D L Sbjct: 121 FDAGKMLTHG-GLRFDLEAHRLFYNDQ-PVELSVRELAVFEVLLSRQGQVVTKEQMIDRL 178 Query: 181 RSGGEEYDAHRIDALIYRVRQKLRSLPEAPMQIRNIYGEGFLMLRRSSA 229 G++ ++ I+ ++R R+KL + IR + G G+L+ + A Sbjct: 179 FGWGDDGGSNAIEVYVHRTRKKLEPY---NINIRTVRGMGYLLEKSGEA 224 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 525,829 Number of extensions: 20102 Number of successful extensions: 117 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 17 Length of query: 236 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 156 Effective length of database: 925,261 Effective search space: 144340716 Effective search space used: 144340716 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)