BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3657.p (436 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Jan... 183 2e-47 gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Jan... 170 1e-43 gi|152982376|ref|YP_001354943.1| major facilitator transporter [... 142 3e-35 gi|152980800|ref|YP_001354171.1| major facilitator superfamily s... 137 2e-33 gi|152982732|ref|YP_001353683.1| major facilitator transporter [... 123 2e-29 >gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 439 Score = 183 bits (465), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 129/373 (34%), Positives = 205/373 (54%), Gaps = 7/373 (1%) Query: 30 SALGGTLEFYDFVIYVFFAAVV-GKLFFPADMPEWLRMLQTFGIFAAGYLARPVGGIIIA 88 SA+G +E+YDF+IY AA+V KLFFP ++ L L G +A G+LARP+GG I Sbjct: 28 SAIGTIIEWYDFLIYGMAAALVFNKLFFP-NIDPLLGTLAALGSYAVGFLARPLGGAIFG 86 Query: 89 HYGDVIGRKRMFTLSIFLMAVPTLVIGLLPTYASIGVAAPILLLLMRTLQGAAIGGEMPG 148 HYGD IGRK + +++ LM + T +IGLLPTY IG+ APILL+ +R +QG +GGE G Sbjct: 87 HYGDRIGRKSILMITLALMGIGTFLIGLLPTYGQIGIWAPILLITLRIIQGIGLGGEWGG 146 Query: 149 AWVFVAEHVPANRYSFGVGSLTAGITGGILLGSLMGIFINSVYQPAEVAAYAWRIPFLLG 208 A V V EH P NR F + G G+++ +L+ F++ + + A++ ++ WRIPFLL Sbjct: 147 AAVMVLEHSPKNRRGFYGSLVQVGFPLGLVIATLVFSFVSKMPE-ADILSWGWRIPFLLS 205 Query: 209 GVFGLVSVYLRRYLEETPVFRELAARRKQSHELPLKTVLREHRGASLLTAGMTWCLSGAV 268 V +V +++R+ +EE+PVF ++ R+ S P+ V+ +H + G+ V Sbjct: 206 AVLIIVGIFIRKNVEESPVFEDMKMRKALSKS-PVMDVILKHPRTFFIAIGLKISEVSWV 264 Query: 269 VVVILMTPSYLQTVHHLPAKLVMQANCAGTLMLTIGCLLIGWLCDRIGTRASMILG-WGG 327 ++ + Y T LP L+++A ++ + L G+L D IG R +G Sbjct: 265 YMLTVFMVVYATTTLGLPKSLILEAILIAAMVEIVTIPLFGYLSDVIGRRPLYFIGALFT 324 Query: 328 LGLSSWWFYGQLPGSPESLIWGYALVGLFVGSIALTPIVS--TRAFPPPVRFTGLSFAYN 385 + + F +PE++I + + P + F VR++G SF + Sbjct: 325 IAFAFPLFLFMEMRTPEAVILTVVVAMSMGHGLMFAPEATYFPELFGANVRYSGASFGFQ 384 Query: 386 MAYAIFGGLTPVL 398 +A AI GGL+P++ Sbjct: 385 VAAAIGGGLSPII 397 >gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 437 Score = 170 bits (431), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 130/380 (34%), Positives = 202/380 (53%), Gaps = 21/380 (5%) Query: 30 SALGGTLEFYDFVIYVFFAAVV-GKLFFPADMPEWLRMLQTFGIFAAGYLARPVGGIIIA 88 S++G +E+YDF+IY AA+V KLFFP P + L G +A G+ ARP+GG I Sbjct: 28 SSIGTIIEWYDFLIYGMAAALVFNKLFFPNVSPV-IGTLAALGTYAVGFFARPLGGAIFG 86 Query: 89 HYGDVIGRKRMFTLSIFLMAVPTLVIGLLPTYASIGVAAPILLLLMRTLQGAAIGGEMPG 148 H+GD +GRK M L++F+M + T++IG LPTY IG+ AP+LL+++R +QG +GGE G Sbjct: 87 HFGDRVGRKSMLLLTMFIMGIGTVLIGCLPTYEHIGIWAPVLLIVLRFIQGVGLGGEWGG 146 Query: 149 AWVFVAEHVPANRYSFGVGSLTAGITGGILLGSLMGIF-INSVYQPAEVAAYAWRIPFLL 207 A + V EH P +R F + G G++L + G+F I S A+ ++ WRIPFLL Sbjct: 147 AALMVLEHAPKHRRGFYGSLVQVGFPLGLVLAT--GVFAIVSKLPEADFLSWGWRIPFLL 204 Query: 208 GGVFGLVSVYLRRYLEETPVFRELAARRKQSHELPLKTVLREHR----GASLLTAGMTWC 263 V +V +R +EE+P+F ++ A+ + S + L +L+ R L + ++W Sbjct: 205 SIVLVVVGYVIRSKVEESPIFLQMKAKNELSKQPVLDAILKNPRAFLTAIGLKISEVSWV 264 Query: 264 LSGAVVVVILMTPSYLQTVHHLPAKLVMQANCAGTLMLTIGCLLIGWLCDRIGTRASMIL 323 V +V+ T + LP L++ L+ I L G L D++G R I Sbjct: 265 YILTVFIVVHATNNL-----QLPKSLILDGILYAALVEVITIPLFGLLSDKVGRRPMYI- 318 Query: 324 GWGGLGLSSWWF--YGQLPGSPESLIWGYALVGLFVGS---IALTPIVSTRAFPPPVRFT 378 WG L + F + L ++I G +V L +G A F VR++ Sbjct: 319 -WGALFTVALAFPLFILLDTRDSAIIIGVMIVALSLGHGFMFAPEATYFPELFGANVRYS 377 Query: 379 GLSFAYNMAYAIFGGLTPVL 398 G + + +A AI GGL+P++ Sbjct: 378 GATLGFQVAAAIGGGLSPII 397 >gi|152982376|ref|YP_001354943.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 439 Score = 142 bits (359), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 126/402 (31%), Positives = 190/402 (47%), Gaps = 38/402 (9%) Query: 12 NESQHRPLTSSDYRTLGLSALGGTLEFYDFVIYVFFAAVV-GKLFFPADMPEWLRMLQTF 70 +E ++ P T L S +G T+EF+DF IY A +V LFFP+ P MLQ+ Sbjct: 8 SEKKNSPAT-----VLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPSSNPT-AGMLQSL 61 Query: 71 GIFAAGYLARPVGGIIIAHYGDVIGRKRMFTLSIFLMAVPTLVIGLLPTYASIGVAAPIL 130 FA + ARPVG + HYGD IGRK ++ M + T+VIGLLPTY +IG AP+L Sbjct: 62 ATFAIAFFARPVGSAVFGHYGDRIGRKATLVAALLTMGISTVVIGLLPTYEAIGTLAPLL 121 Query: 131 LLLMRTLQGAAIGGEMPGAWVFVAEHVPANRYSFGVGSLTAGITGGILLGSLMGIFINSV 190 L L R QG +GGE GA + E+ P + ++ G G L + + ++ Sbjct: 122 LALCRFGQGLGLGGEWGGAVLLATENAPPGKIAWYGCFPQLGAPLGFFLSGGIFLLLSET 181 Query: 191 YQPAEVAAYAWRIPFLLGGVFGLVSVYLRRYLEETPVFRELAARRKQSHELPLKTVLREH 250 + +Y WRIPF+ V LV +Y+R + ETPVF+++ + ++ ++P+ T+ REH Sbjct: 182 LTNEQFFSYGWRIPFIASAVLVLVGLYVRLKITETPVFQKVLDKNERV-KVPIATIFREH 240 Query: 251 RGASLLTAGMTWCLSGAVVVVILMTPSYLQTVHHL-----------PAKLVMQANCAGTL 299 +L G ++ YL TV L L++Q Sbjct: 241 SRVLVL---------GTIIATATFVLFYLMTVFALSWGTTGLGYTRKEFLILQLFAVVFF 291 Query: 300 MLTIGCLLIGWLCDRIGTRASMIL-----GWGGLGLSSWWFYGQLPGSPESLIWGYALVG 354 LTI + L D+ G R +MIL G +S + G L G AL+G Sbjct: 292 ALTIP--ISALLADKYGRRITMILVSIAIMLFGFLISPMFVAHDAIGVTFFLSLGLALMG 349 Query: 355 LFVGSIALTPIVSTRAFPPPVRFTGLSFAYNMAYAIFGGLTP 396 + G + + + FP +R+TG+S +N+ + L P Sbjct: 350 MTYGPLG---TMLSELFPTEIRYTGVSLTFNLGGIVGASLAP 388 >gi|152980800|ref|YP_001354171.1| major facilitator superfamily sugar transporter [Janthinobacterium sp. Marseille] Length = 544 Score = 137 bits (344), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 104/324 (32%), Positives = 164/324 (50%), Gaps = 16/324 (4%) Query: 10 ALNESQHRPLTSSDYRTLGL-SALGGTLEFYDFVIYVFFAAVVGKLFFPADMPEWLRMLQ 68 ++ ++ T+ + R + L S LG E+YDF IY A + + FP D P +L Sbjct: 5 SITSTEADVFTAKEERQVVLASTLGTIFEWYDFFIYGSLAIFMSSVLFPPDNPT-AALLA 63 Query: 69 TFGIFAAGYLARPVGGIIIAHYGDVIGRKRMFTLSIFLMAVPTLVIGLLPTYASIGVAAP 128 + G AAG++ RP+G ++ + GD +GRK F L+I +M T +IG LP+YAS+G AA Sbjct: 64 SLGALAAGFVIRPIGAVLFGYLGDRLGRKHTFLLTIIMMGGSTALIGFLPSYASVGHAAW 123 Query: 129 ILLLLMRTLQGAAIGGEMPGAWVFVAEHVPANRYSFGVGSLTAGITGGILLGSLMGIFIN 188 I L+++R +QG A+GGE GA ++VAEH +R G + + G++L + + Sbjct: 124 ISLVVLRLVQGLAVGGEYGGAVIYVAEHSRPSRRGLLTGWIQITSSMGLILSIAVILGTQ 183 Query: 189 SVYQPAEVAAYAWRIPFLLGGVFGLVSVYLRRYLEETPVFRELAARRKQSHELPLKTVLR 248 + A + WR+PF++ + SVY+R L E+PVF L A+ + S T + Sbjct: 184 ATMDMASFKEWGWRVPFIISIAMLIFSVYVRAKLHESPVFTRLKAQGRLSKNPVRDTFFK 243 Query: 249 EHRGASLLTA--------GMTWCLSGAVVVVILMTPSYLQTVHHLPAKLVMQANCAGTLM 300 +L A G T+ +G V+I +LQ L + V C G L+ Sbjct: 244 WPSLKMILLALFGVTAGQGATY-FTGQFYVMI-----FLQQAVMLDQRTVYTLICIGFLI 297 Query: 301 LTIGCLLIGWLCDRIGTRASMILG 324 + GWL DR+G + M+ G Sbjct: 298 GAPAFVFFGWLSDRLGRKWIMMAG 321 >gi|152982732|ref|YP_001353683.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 553 Score = 123 bits (309), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/231 (35%), Positives = 127/231 (54%), Gaps = 9/231 (3%) Query: 13 ESQHRPLTSSDYRTLGLSALGGTLEFYDFVIYVFFAAVVGKLFFPADMPEWLRMLQTFGI 72 + R +T + + + S+LG E+YDF +Y AA++ K FF P + Sbjct: 5 STTDRSITPEERKVIFASSLGTVFEWYDFYLYGSLAAIIAKQFFAGTDPNTAFIFALLA- 63 Query: 73 FAAGYLARPVGGIIIAHYGDVIGRKRMFTLSIFLMAVPTLVIGLLPTYASIGVAAPILLL 132 FAAG++ RP G I+ GD+IGRK F ++I +M T ++GLLP YASIG+AAPI+L+ Sbjct: 64 FAAGFIVRPFGAIVFGRLGDMIGRKYTFLVTIVIMGTSTFIVGLLPNYASIGIAAPIILI 123 Query: 133 LMRTLQGAAIGGEMPGAWVFVAEHVPANRYSFGVGSLTAGITGGILLGSLMGIFI----N 188 ++R LQG A+GGE GA +VAEH P + G+ T+ I +G M + + Sbjct: 124 ILRILQGLALGGEYGGAATYVAEHAPHGKR----GAFTSWIQTTATMGLFMSLLVILGTR 179 Query: 189 SVYQPAEVAAYAWRIPFLLGGVFGLVSVYLRRYLEETPVFRELAARRKQSH 239 + A + WRIPFL+ +SV++R + E+P F ++ + K S Sbjct: 180 TAMGEEAFADWGWRIPFLVSVFLLGISVWIRLSMNESPAFLKMKSEGKASK 230 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.327 0.143 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,007,069 Number of extensions: 42015 Number of successful extensions: 206 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 192 Number of HSP's successfully gapped: 7 Length of query: 436 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 350 Effective length of database: 903,079 Effective search space: 316077650 Effective search space used: 316077650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)