BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3656.p (523 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981433|ref|YP_001351770.1| methyl-accepting chemotaxis pro... 429 e-121 gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis pro... 412 e-116 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 371 e-104 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 364 e-102 gi|152983038|ref|YP_001352600.1| methyl-accepting chemotaxis pro... 363 e-101 >gi|152981433|ref|YP_001351770.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 429 bits (1103), Expect = e-121, Method: Compositional matrix adjust. Identities = 263/511 (51%), Positives = 350/511 (68%) Query: 1 MFANLTIKTRLITVIGFLLVISFLIGTTSLISLINVNNSLKTVYEDRLIALSQLDQVIRS 60 M NLTIK+ L++V+ L V+ G L SL N++LKTVYEDR +AL +L+ VI Sbjct: 1 MLKNLTIKSLLLSVMSILSVLLVGTGILGLSSLSATNDALKTVYEDRTVALGELNTVITL 60 Query: 61 SNKMQINIARALVSSQEELATHIASFKKEESVRDKVWKDYLATYLTPDEKALADTLVREQ 120 Q+++A ++ + + + +K + Y T LT +EKALA + Sbjct: 61 LTINQLDLAASIYGDPNLVLPKMDAIEKRTKTIASTFGAYEQTQLTTEEKALAGKFSADY 120 Query: 121 KLLDEKGFAPALNALNGGDMKTVATLIHGDIARYATSITETMNALIQLQTEVAKSEYENS 180 K +K PA+ A GG++ V +++ + + + +LI +Q + AK E+E S Sbjct: 121 KKFVDKALVPAIAASRGGNVLRVTEIVNETMEGLILPVRADVTSLIDIQLQEAKREFEAS 180 Query: 181 QQRYQSFRSFSIAAIICSILVGSLIGLWLIRSINRPLNSAIEVAQRIASGDLTQSIEVGG 240 Q R+ R+ SIAAII +L+ + + WL+R I RPL A++VA+ +A+GDLTQ I+V Sbjct: 181 QARFTLVRNISIAAIIFGVLIAAFMAFWLLRLIVRPLREAVDVARSVAAGDLTQQIQVRS 240 Query: 241 TNEMGRLLRALQEMSKALTQAVTQVRHSTDSITTASAEIASGNLDLSSRTEEQAASLEQT 300 +NE G+LL+A+++M+ +L Q V+ VRH T++IT AS EIASGN DLSSRTE QA SLE+T Sbjct: 241 SNETGQLLQAIKDMNDSLAQTVSAVRHGTETITLASGEIASGNADLSSRTEAQAGSLEET 300 Query: 301 ASSMEELTSTVKQNADNALQANVLMAQARKQAENGGGIVNQVVATMNDIKQSSSHMVDII 360 ASSMEELTSTV+QNADNA QAN L A A + A GG +V +VV TM I+ SS +VDII Sbjct: 301 ASSMEELTSTVRQNADNARQANQLAASASEVAVKGGVVVAEVVQTMGSIQDSSRKIVDII 360 Query: 361 TVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSASAAKEIRELIEASL 420 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSA+AAKEI+ LI S+ Sbjct: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRNLAQRSAAAAKEIKVLIGDSV 420 Query: 421 QKISSGGNLVNDAGAVMEETVDSVKRVAQLMEDIAAASQEQSNGIDQVNLAIGQMDQVTQ 480 K+ +G N V AG M+E V SV+RV +M +I AASQEQ++GI+Q+N AI QMD++TQ Sbjct: 421 DKVEAGSNQVTQAGKTMDEIVSSVRRVTDIMAEITAASQEQTSGIEQINQAITQMDEMTQ 480 Query: 481 QNAALVEEAAAAASSLRDQAQILTGAVSVFK 511 QNAALVE+AAAAA+SL+ QA L+ V VFK Sbjct: 481 QNAALVEQAAAAAASLQQQANGLSQVVGVFK 511 >gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 412 bits (1060), Expect = e-116, Method: Compositional matrix adjust. Identities = 253/514 (49%), Positives = 331/514 (64%), Gaps = 5/514 (0%) Query: 1 MFANLTIKTRLITVIGFLLVISFLIGTTSLISLINVNNSLKTVYEDRLIALSQLDQVIRS 60 MF NL+IK RLI + F+ ++ + G + L + NNSL+ VY ++L + ++ I Sbjct: 1 MFNNLSIKMRLIGTMAFMGIMLIVGGAMGVFGLQSTNNSLQDVYGNQLASSQAINTAITR 60 Query: 61 SNKMQINIARALVSSQEELATHIASFKKEESVR---DKVWKDYLATYLTPDEKALADTLV 117 + + I R L+ S I F + +++R D WK Y A + DEK LAD + Sbjct: 61 LFQARSTIDRVLIKSSGSKNAEI--FARADTLRNESDAAWKQYYALPMNADEKKLADEVT 118 Query: 118 REQKLLDEKGFAPALNALNGGDMKTVATLIHGDIARYATSITETMNALIQLQTEVAKSEY 177 + +G P + A+ G + L+ +T++ L + Q + A + Y Sbjct: 119 ANRDTYLREGALPLIKAIQAGLFEEAELLMLEKATPLFIKMTQSAEKLQEFQMKAAAASY 178 Query: 178 ENSQQRYQSFRSFSIAAIICSILVGSLIGLWLIRSINRPLNSAIEVAQRIASGDLTQSIE 237 E+SQ + FR +I ++ +LV ++ +LIR+I +PL + I++GDLT IE Sbjct: 179 ESSQSMFSLFRIAAIGGVLFGLLVVAIAAFFLIRAIMQPLGEMLNHFSAISAGDLTSRIE 238 Query: 238 VGGTNEMGRLLRALQEMSKALTQAVTQVRHSTDSITTASAEIASGNLDLSSRTEEQAASL 297 V NEMG+L+ LQ M K+L + V VR + +I A+ +IA+GNLDLSSRTE+QA+SL Sbjct: 239 VKSRNEMGKLMGGLQVMQKSLIETVFNVRQGSTAIGVATQQIAAGNLDLSSRTEQQASSL 298 Query: 298 EQTASSMEELTSTVKQNADNALQANVLMAQARKQAENGGGIVNQVVATMNDIKQSSSHMV 357 E+TASSMEELTSTVKQNADNA QAN L A A AE GG +V+QVV TM +I S+ +V Sbjct: 299 EETASSMEELTSTVKQNADNARQANQLAASASTVAEKGGVVVSQVVDTMEEINTSAKKIV 358 Query: 358 DIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSASAAKEIRELIE 417 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEI+ LI Sbjct: 359 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIG 418 Query: 418 ASLQKISSGGNLVNDAGAVMEETVDSVKRVAQLMEDIAAASQEQSNGIDQVNLAIGQMDQ 477 S+ K+ G LV +AG M+E V V++V +M +I AASQEQS GI+QVN AI QMDQ Sbjct: 419 DSVDKVEIGSKLVAEAGVTMKEVVHGVQQVTDIMSEITAASQEQSAGIEQVNQAISQMDQ 478 Query: 478 VTQQNAALVEEAAAAASSLRDQAQILTGAVSVFK 511 VTQQNAALVEEAAAAA SL +QA L AVSVFK Sbjct: 479 VTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFK 512 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 371 bits (953), Expect = e-104, Method: Compositional matrix adjust. Identities = 250/521 (47%), Positives = 338/521 (64%), Gaps = 10/521 (1%) Query: 4 NLTIKTRLITVIGFLLVISFLIGTTSLISLINVNNSLKTVYEDRLIALSQLDQVIRSSNK 63 NL I TRL LL + ++ ++ L V S V ++ +L Q S+ Sbjct: 5 NLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTS-ADVMTQTMLPKERLAQEWLSA-- 61 Query: 64 MQINIARALVSSQEELATHIASFKKE---ESVR-DKVWKDYLATYLTPDEKALADTLVRE 119 + +N AR L S++ A A F+K+ SVR +++ K+ + TP++K L + LV Sbjct: 62 VDVNGARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKEIESMIKTPEDKRLFEELVVA 121 Query: 120 QKLL-DEKGFAPALNALNGGDMKTVATLIHGDIARYATSITETMNALIQLQTEVAKSEYE 178 + D + L A G + LI+ + + + +++A++Q + ++ Sbjct: 122 RNAYRDIRQTVFKLKA--EGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDEAGT 179 Query: 179 NSQQRYQSFRSFSIAAIICSILVGSLIGLWLIRSINRPLNSAIEVAQRIASGDLTQSIEV 238 + Q + S RS I + ++ +G L SI RPLN A+ VA+ +ASGDL+ IEV Sbjct: 180 SIQSAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDLSAKIEV 239 Query: 239 GGTNEMGRLLRALQEMSKALTQAVTQVRHSTDSITTASAEIASGNLDLSSRTEEQAASLE 298 +E G+L++AL++M+++L + V++VR T++I TAS +IASGNLDLSSRTEEQA+SL Sbjct: 240 SSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEEQASSLG 299 Query: 299 QTASSMEELTSTVKQNADNALQANVLMAQARKQAENGGGIVNQVVATMNDIKQSSSHMVD 358 +TA+SM +LTSTV+QNADNA QAN L A A GG +V++VV TM I +S+ +VD Sbjct: 300 ETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINESARKIVD 359 Query: 359 IITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSASAAKEIRELIEA 418 II+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEI+ LI Sbjct: 360 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKILIGD 419 Query: 419 SLQKISSGGNLVNDAGAVMEETVDSVKRVAQLMEDIAAASQEQSNGIDQVNLAIGQMDQV 478 S+ K+ +G LVN+AG+ M E VDSVKRV +M +I AASQEQS+GIDQVN AIGQMDQV Sbjct: 420 SVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAIGQMDQV 479 Query: 479 TQQNAALVEEAAAAASSLRDQAQILTGAVSVFKTEQSHHAM 519 TQQNAALVEEAAAAA SL+DQA L VS FK + + A Sbjct: 480 TQQNAALVEEAAAAAESLQDQAGNLARVVSQFKLDGNQPAF 520 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 364 bits (934), Expect = e-102, Method: Compositional matrix adjust. Identities = 203/316 (64%), Positives = 255/316 (80%) Query: 196 ICSILVGSLIGLWLIRSINRPLNSAIEVAQRIASGDLTQSIEVGGTNEMGRLLRALQEMS 255 + ++++ + +G RSI RPL+ A+ +A+++A GDLT +I V +E G+LL+ALQ+M+ Sbjct: 195 VIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVTSKDETGQLLQALQDMN 254 Query: 256 KALTQAVTQVRHSTDSITTASAEIASGNLDLSSRTEEQAASLEQTASSMEELTSTVKQNA 315 L + VTQVR TD+I TAS++IA+GNLDLSSRTEEQA+SLE+TASSMEELTSTVKQNA Sbjct: 255 NGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETASSMEELTSTVKQNA 314 Query: 316 DNALQANVLMAQARKQAENGGGIVNQVVATMNDIKQSSSHMVDIITVIDGIAFQTNILAL 375 DNA Q+N L A + A GG +V+QVV TM I S++ +VDII VIDGIAFQTNILAL Sbjct: 315 DNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDIIGVIDGIAFQTNILAL 374 Query: 376 NAAVEAARAGEQGRGFAVVASEVRGLAQRSASAAKEIRELIEASLQKISSGGNLVNDAGA 435 NAAVEAARAGEQGRGFAVVASEVR LAQRSASAAKEI+ LI+ S++K+++G LV+DAG Sbjct: 375 NAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVEKVNNGSRLVHDAGT 434 Query: 436 VMEETVDSVKRVAQLMEDIAAASQEQSNGIDQVNLAIGQMDQVTQQNAALVEEAAAAASS 495 M E V+SV+RV +M +I AASQEQ++GI+Q+N A+ QMDQVTQQNAALVEEAAAAA S Sbjct: 435 TMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQQNAALVEEAAAAAES 494 Query: 496 LRDQAQILTGAVSVFK 511 L+DQA L+ VSVFK Sbjct: 495 LQDQANNLSQVVSVFK 510 >gi|152983038|ref|YP_001352600.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 573 Score = 363 bits (931), Expect = e-101, Method: Compositional matrix adjust. Identities = 262/542 (48%), Positives = 341/542 (62%), Gaps = 44/542 (8%) Query: 2 FANLTIKTRLITVIGFLLVISFLIGTTS--LISLINVNNSLKTVYEDRLIALSQLDQVIR 59 F+NL I TRL IGF LV++ + T+ + + N+ L T+ +D + ++ L + Sbjct: 3 FSNLKIGTRL--TIGFFLVLALMAALTACGVNGMQNIQKRLNTIIDDNVHKMNLLQDMSE 60 Query: 60 SSNKMQINIAR-ALVSSQEELATHIASFKKEESVRDKVWKDYLATYLTPDEK-ALADTLV 117 S + + ++ L+ ++ E+ I KK R K Y A L ++K AL V Sbjct: 61 SVHIVSHSMGTLVLMRNESEMVLEI---KKVVDARSK----YDAAILVLEKKPALEVERV 113 Query: 118 REQKLLDEKGFAPALN------ALNGGDMKTVATLIHGDIARYATSITET----MNALIQ 167 +K+ + A +N A D + A LI + A + + ++ IQ Sbjct: 114 LREKIKGAQADARVVNDQIIEFARGNKDEEASALLI-----KTAEPLNQAWQQALDQSIQ 168 Query: 168 LQTEV-------AKSEYENSQQRYQSFRSFSIAAIICSILVGSLIGLWLI-RSINRPLNS 219 LQ A + YENSQ Y + S A+I I++ W+I RSI+RP+ S Sbjct: 169 LQKHANEADAVAATATYENSQ-LYMG--ALSGVALILGIVIA-----WVITRSISRPIIS 220 Query: 220 AIEVAQRIASGDLTQSIEVGGTNEMGRLLRALQEMSKALTQAVTQVRHSTDSITTASAEI 279 A+ VA +A GDLT IE+ +E G+LL AL++M+ L VTQVRH T++I TASAEI Sbjct: 221 AMNVANTVALGDLTSHIEITTADESGQLLHALKDMNDNLVSIVTQVRHGTETIATASAEI 280 Query: 280 ASGNLDLSSRTEEQAASLEQTASSMEELTSTVKQNADNALQANVLMAQARKQAENGGGIV 339 A+GNLDLS+RTEEQA+SLEQTASSMEELTSTVK N DNA QAN L A A GG +V Sbjct: 281 ATGNLDLSARTEEQASSLEQTASSMEELTSTVKHNFDNARQANKLALNASDAASRGGVVV 340 Query: 340 NQVVATMNDIKQSSSHMVDIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR 399 QVV TM I SS + DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR Sbjct: 341 AQVVETMGFINGSSRKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR 400 Query: 400 GLAQRSASAAKEIRELIEASLQKISSGGNLVNDAGAVMEETVDSVKRVAQLMEDIAAASQ 459 LAQRS++AAK+IR LI +S+QKI +G LV +AG M+E V SV++V +M +I AAS+ Sbjct: 401 NLAQRSSAAAKDIRILIGSSVQKIDAGSLLVEEAGRTMKEIVISVQQVTSIMAEITAASE 460 Query: 460 EQSNGIDQVNLAIGQMDQVTQQNAALVEEAAAAASSLRDQAQILTGAVSVFKTEQSHHAM 519 EQS GI+QVN AI QMDQVTQQNAALVEEAAAAA+SLR+QA+ L+ V VFK + + H M Sbjct: 461 EQSAGIEQVNQAIAQMDQVTQQNAALVEEAAAAAASLREQAENLSKVVRVFKLDNTQHMM 520 Query: 520 TL 521 + Sbjct: 521 PM 522 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.313 0.125 0.319 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 872,183 Number of extensions: 28796 Number of successful extensions: 238 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 146 Number of HSP's successfully gapped: 21 Length of query: 523 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 435 Effective length of database: 895,685 Effective search space: 389622975 Effective search space used: 389622975 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)