BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3652.p (295 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Jant... 132 2e-32 gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Jant... 125 4e-30 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 124 1e-29 gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reduc... 115 2e-27 gi|152982842|ref|YP_001352381.1| short chain dehydrogenase [Jant... 112 3e-26 >gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 278 Score = 132 bits (333), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/241 (38%), Positives = 128/241 (53%), Gaps = 7/241 (2%) Query: 55 LITGGDSGIGRAVALAYAREGARLAIVYLDEEE-DARQTQQQVQGLDAPCLLLPGDVGSP 113 LITG +GIGRA A A+AREG R+A+ EE +A + + G +A LL DV Sbjct: 36 LITGALTGIGRATAFAFAREGYRVAVSGRREEAGNALAAELRALGNEAEFLL--ADVRFE 93 Query: 114 EFCRSAVRAVMEAYGRLDVLVNNAAQQYPAKSIEQISQEQLEHTFRTNIF-SMFYMVKEA 172 R+ V + +GR+DV VNNA + I + S TF N+ +M + E Sbjct: 94 ADVRNLVEQTVVRFGRIDVAVNNAGTEGQLAPIVEQSAANYAETFGVNVLGTMLSLKHEM 153 Query: 173 MPFLTRGA-RIINTTSVTAYRGSKHLVDYAATKGTIVAFTRSLSQQLAAAGIHVNAVAPG 231 L +G+ IIN +SV G Y A+K + T+S + + AAAG+ VNAVAPG Sbjct: 154 RVMLAQGSGSIINLSSVAGKVGIAGASVYVASKHAVEGLTKSAALEGAAAGVRVNAVAPG 213 Query: 232 PIWTPLIPSSF--SEEEVASFGKNVPLGRPGQPDEVAPAYVFLATEGASYMTGQVLHPNG 289 P+ T ++ SEE A F +P GR PDE+A VFLA++ SY+TGQ + +G Sbjct: 214 PVATEMLDRFVGGSEENKAGFLATIPAGRAATPDEIAQTIVFLASDKVSYLTGQSIAVDG 273 Query: 290 G 290 G Sbjct: 274 G 274 >gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 246 Score = 125 bits (313), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 116/239 (48%), Gaps = 1/239 (0%) Query: 52 KVALITGGDSGIGRAVALAYAREGARLAIVYLDEEEDARQTQQQVQGLDAPCLLLPGDVG 111 KVA+ITG GIG A+A A++G + I Y +A ++Q + + DV Sbjct: 7 KVAIITGASRGIGAAIAERLAQDGFAVVINYASSATEADALVAKLQAAQHEAIAVKADVA 66 Query: 112 SPEFCRSAVRAVMEAYGRLDVLVNNAAQQYPAKSIEQISQEQLEHTFRTNIFSMFYMVKE 171 + R + G++DVL+NNA A S+ + S E E TF N+ F ++E Sbjct: 67 NSADVRRLFDETEQKLGKVDVLINNAGILQMA-SLAETSDELFERTFSINVRGTFNTLRE 125 Query: 172 AMPFLTRGARIINTTSVTAYRGSKHLVDYAATKGTIVAFTRSLSQQLAAAGIHVNAVAPG 231 A L G R++N +S T + Y +K + T ++++ I VNAVAPG Sbjct: 126 AATRLNDGGRVVNFSSTTVAMSLPNYSVYTGSKAAVEVLTPIFAKEMRGRNITVNAVAPG 185 Query: 232 PIWTPLIPSSFSEEEVASFGKNVPLGRPGQPDEVAPAYVFLATEGASYMTGQVLHPNGG 290 P+ T L + +E ++ PL R GQPD++A A FL ++ GQVL NGG Sbjct: 186 PVATDLFFNGKTEAQIQQLANMPPLQRLGQPDDIAAAVSFLVGRDGGWINGQVLRANGG 244 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 124 bits (310), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 134/248 (54%), Gaps = 8/248 (3%) Query: 49 LAGKVALITGGDSGIGRAVALAYAREGARLAIVYLDEEEDARQTQQQVQGLDAPCLLLPG 108 L+G+VAL+TG GIGRA+A A+ GA++ E A ++ G L Sbjct: 6 LSGQVALVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEYLGNGGKGVVL---- 61 Query: 109 DVGSPEFCRSAVRAVMEAYGRLDVLVNNAAQQYPAKSIEQISQEQLEHTFRTNIFSMFYM 168 DV + + + + +G + +LVNNA ++ ++ E+ + TN+ ++ + Sbjct: 62 DVNDAARSVALIDEIQKEFGAVSILVNNAGITQDQLAM-RMKDEEWDSVIATNLTAVGRL 120 Query: 169 VKEAMPFLTRG--ARIINTTSVTAYRGSKHLVDYAATKGTIVAFTRSLSQQLAAAGIHVN 226 + + + + RIIN TSV G+ ++YAA K + +R+L++++ + I VN Sbjct: 121 SRAVLRGMMKAKTGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVN 180 Query: 227 AVAPGPIWTPLIPSSFSEEEVASFGKNVPLGRPGQPDEVAPAYVFLATEGASYMTGQVLH 286 +APG I T + + SE+++A+ + VPLGR G P+++A A FLA+ ASY+TG LH Sbjct: 181 CIAPGFIDTDM-TKTLSEQQIAALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTLH 239 Query: 287 PNGGEIVN 294 NGG +N Sbjct: 240 VNGGMYMN 247 >gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 249 Score = 115 bits (289), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 126/250 (50%), Gaps = 16/250 (6%) Query: 48 RLAGKVALITGGDSGIGRAVALAYAREGARLAIVYLDEEEDARQTQQQVQGLDAPCLLLP 107 +L GKVA + GG GIG A+ AR+GA +A Y+ + A+ Q+++ L + Sbjct: 6 QLTGKVAFVQGGSRGIGAAIVKRLARDGAAVAFTYVSSADKAKAVAQEIEAAGGRALAIH 65 Query: 108 GDVGSPEFCRSAVRAVMEAYGRLDVLVNNAAQQYPAKSIEQISQEQLEHTFRTNIFSMFY 167 D + A++A +A+GR+D+LVNNA A +E E + T N+ S+F Sbjct: 66 ADSSDASAVQQAIQAAAKAFGRIDILVNNAGVLALAP-VEDFKLEDFDRTVAVNVRSVFV 124 Query: 168 MVKEAMPFLTRGARIINTTSVTAYR-----GSKHLVDYAATKGTIVAFTRSLSQQLAAAG 222 +EA + G RII S A R G+ YA +K IV T+ L++ L G Sbjct: 125 ATQEAARHMGEGGRIITIGSTNADRMPFAGGAV----YAMSKAAIVGLTKGLARDLGPRG 180 Query: 223 IHVNAVAPGPIWTPLIP--SSFSEEEVASFGKNVPLGRPGQPDEVAPAYVFLATEGASYM 280 I VN V PGP+ T + P S F++ + + +GR G+ +E+A +LA A Y+ Sbjct: 181 ITVNNVQPGPVDTDMNPANSDFAD----TLKGLMAIGRYGKDEEIASFVAYLAGPEAGYI 236 Query: 281 TGQVLHPNGG 290 TG L +GG Sbjct: 237 TGASLTIDGG 246 >gi|152982842|ref|YP_001352381.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 249 Score = 112 bits (279), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 119/248 (47%), Gaps = 6/248 (2%) Query: 49 LAGKVALITGGDSGIGRAVALAYAREGARLAIVYLDEEEDARQTQQQVQGLDAPCLLLPG 108 +A K+ ++TGG GIG +A A +G + I Y+ + A ++ + + Sbjct: 1 MAKKIMIVTGGSRGIGAEIATLAAADGYAVCISYVKNKAAADAVVAAIREAGGTAIAVAA 60 Query: 109 DVGSPEFCRSAVRAVMEAYGRLDVLVNNAAQQYPAKSIEQISQEQLEHTFRTNIFSMFYM 168 D+ V + G L LVNNA ++Q+ +++ F TNI F Sbjct: 61 DMAVEADILRLFATVDKELGTLTALVNNAGILETQMRVDQMDVARMQRIFNTNIVGTFVC 120 Query: 169 VKEAMPFLTR-----GARIINTTSVTAYRGS-KHLVDYAATKGTIVAFTRSLSQQLAAAG 222 +EA+ ++ G I+N +SV A G VDYAA+KG + T L++++A G Sbjct: 121 AREAVKRMSTKYGGVGGAIVNISSVAARAGGPGEYVDYAASKGAVDTMTIGLAKEVANEG 180 Query: 223 IHVNAVAPGPIWTPLIPSSFSEEEVASFGKNVPLGRPGQPDEVAPAYVFLATEGASYMTG 282 I VNAV PG I+T + S V +VP+ R G+ EVA A ++L ++ ASY TG Sbjct: 181 IRVNAVRPGVIYTEIHASGGEPGRVDRVKASVPMQRGGEAREVAQAAIWLLSDQASYTTG 240 Query: 283 QVLHPNGG 290 L GG Sbjct: 241 SFLDVTGG 248 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.132 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 709,703 Number of extensions: 29959 Number of successful extensions: 164 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 24 Length of query: 295 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 212 Effective length of database: 914,170 Effective search space: 193804040 Effective search space used: 193804040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)