BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3651.p
         (424 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982527|ref|YP_001352848.1| hypothetical protein mma_1158 [...    94   2e-20

>gi|152982527|ref|YP_001352848.1| hypothetical protein mma_1158
           [Janthinobacterium sp. Marseille]
          Length = 658

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 72/130 (55%)

Query: 19  TAGALAVQVPVVQFDENNATVLEIFGQHKELVSLPVVEQQRPIGLISRHIFMSQMSKPYH 78
           TA  L   V  V  + +N  + E+F     L  +PVV    P+GLI+R   + + ++PY 
Sbjct: 328 TAMKLLRSVKAVAPEVHNNRIYEMFNNDPTLEVIPVVSNGIPVGLITRANLIDRFARPYL 387

Query: 79  RELYERKSCIAFMDKNPLIVEADTPIETLGALAVASGDKTLADGFLIVEQGRLAGLGAGL 138
           REL+ +KSC  FMD NPLI + +T +  L  + V +    L +GF+I + G+  G+G   
Sbjct: 388 RELHGKKSCTLFMDSNPLITDKNTALHALSQIIVDADRHHLFNGFIITDNGQYMGMGNAH 447

Query: 139 ALMRELVAMQ 148
            LMRE+  MQ
Sbjct: 448 DLMREITQMQ 457


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 980,802
Number of extensions: 39676
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 338
Effective length of database: 903,079
Effective search space: 305240702
Effective search space used: 305240702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)